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marbl
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CHM13
The complete sequence of a human genome
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CLR reads
#98
YanChunL
closed
3 weeks ago
3
about naming difference in the same database file
#97
zincuum
closed
3 weeks ago
5
Questions about the source of T2T-CHM13 genetic map
#96
lsaeric
opened
2 months ago
5
Problems in chm13v2.0_RefSeq_Liftoff_v5.1.gff3
#95
yeeus
opened
2 months ago
0
Decoy Sequences
#94
DrinnanSante
opened
3 months ago
1
help for 70x PacBio CLR data
#93
lixingqiancs
closed
5 months ago
1
Missing parent gene entry for EPHA2
#92
CodeCheong
opened
7 months ago
2
m64062_190807_194840 subreads
#91
romaingroux
closed
8 months ago
2
CpG methylation annotation for CHM13
#90
guilhermesena1
closed
9 months ago
6
Question regarding 41 protein coding genes identified
#89
singcell
closed
5 months ago
1
mitochondrial genes
#88
kenneditodd
opened
10 months ago
1
Length of chm13v2.0
#87
pholur
closed
11 months ago
2
pseudohomologous regions
#86
ekg
opened
11 months ago
4
Issue with preparing TxDB and GRanges object from GFF file
#85
nicodemus88
opened
12 months ago
4
Short read alignment to the genome
#84
CodeCheong
opened
1 year ago
0
Update README.md
#83
mschatz
closed
1 year ago
0
Latest JHU RefSeqv110 + Liftoff v5 gff3 does not pass gff3 validation
#82
nrockweiler
closed
1 year ago
3
Why are PAR regions in X and Y different sizes?
#81
duartemolha
closed
8 months ago
7
CHM13 liftover chain is incompatible with the import.chain function in R package rtracklayer
#80
zhangjy859
closed
8 months ago
9
GENCODE gene annotation link is stale.
#79
pwh124
closed
1 year ago
1
Is mapping the CHM13 from WGS a good idea right now?
#78
fromtotw
opened
1 year ago
1
Is there phased 1000g variations data available base on CHM13
#77
zhangjy859
closed
1 year ago
1
is it a good time for a reference genome switch?
#76
seru71
opened
1 year ago
5
[Feature request] Host a STAR index for this build
#75
jolespin
opened
1 year ago
0
SF3B3 gene annotation missing in gff3
#74
fbrundu
closed
1 year ago
2
GTF format of the orignal GFF
#73
sum732
closed
1 year ago
7
CHM13 v2 genome accessibility masks for 1000 Genomes data
#72
zhang919
closed
1 year ago
1
refSS regions of CHM13v2 ?
#71
unique379r
opened
1 year ago
2
partition233-234.tgz md5
#70
SarahChen0401
closed
4 weeks ago
1
methylation tables
#69
ShuaiNIEgithub
closed
1 year ago
2
More info on the centromeric satellite masking BED file
#68
guilhermesena1
closed
1 year ago
3
Do you have 2.0 <-> 1.0 chain files?
#67
benbfly
closed
1 year ago
3
Huge discrepancy in RepeatMasker lists between the UCSC version and the NCBI version
#66
pliang64
opened
1 year ago
13
Request for telomere mask bed file
#65
pliang64
closed
1 year ago
1
guppy v6
#64
aafshinfard
closed
4 weeks ago
17
Extracting a subset of data from raw nanopore signal data
#63
hasindu2008
opened
1 year ago
5
99 new genes?
#62
renjieshang
closed
1 year ago
2
HG38 to CHM13v2 VCF liftover using chain
#61
jamesdalg
closed
1 year ago
6
CADD scores for T2T-CHM13
#60
xosxos
opened
2 years ago
2
CHM13v2 to HG38 liftover, chain import problems
#59
jamesdalg
closed
2 years ago
3
chrom.sizes file?
#58
jamesdalg
closed
2 years ago
2
GFF input file used for generating CAT and Liftoff CHM13.v2.0.gff3 annotation
#57
bernardo-heberle
closed
2 years ago
2
Reference bias issue for some validated variants?
#56
xiaoguanghuan1
closed
1 year ago
1
An unmasked version of the genome?
#55
YiyanYang0728
closed
2 years ago
4
Table for conversion of CAT and Liftoff IDs to Ensembl IDs
#54
bernardo-heberle
closed
2 years ago
1
Update README.md
#53
maximilianh
closed
2 years ago
0
Problems in gff
#52
mpovidlov1
opened
2 years ago
6
GFF version 2.0 lacking mitochondrial encoded genes
#51
bernardo-heberle
closed
2 years ago
3
Update README.md
#50
maximilianh
closed
2 years ago
0
hg38 to CHM13 LiftOver and chr15 seg dup
#49
mvelinder
closed
2 years ago
1
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