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marschall-lab
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gaftools
General purpose utility related to GAF files
https://gaftools.readthedocs.io/
MIT License
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Adding deployment rule for PyPI. Minor updates to documentation
#27
samarendra-pani
closed
2 months ago
1
Parallel realign handles job killed
#26
fawaz-dabbaghieh
closed
2 months ago
0
Adding tox tests and continuous integration in GitHub
#25
samarendra-pani
closed
2 months ago
0
Adding Read The Docs documentation and Python Packaging
#24
samarendra-pani
closed
3 months ago
0
Updating view command to include conversion.
#23
samarendra-pani
closed
3 months ago
0
Parallel realign
#22
fawaz-dabbaghieh
closed
3 months ago
0
Improve order_gfa documentation
#21
adadiehl
closed
4 months ago
2
Gaftools stat does not work with a GAF file as input
#20
fatimazahraabani
closed
5 months ago
6
Possible to use GFA 1.0 as input to gaftools index?
#19
adadiehl
closed
4 months ago
1
order_gfa with minigraph-cactus
#18
asylvz
closed
8 months ago
4
[Feature Request] Extract chromosome path from graph with the GFA class
#17
fawaz-dabbaghieh
closed
8 months ago
3
Let order_gfa output nodes and edges in an order corresponding to BO and NO tags
#16
tobiasmarschall
closed
5 months ago
10
Bug in order_gfa after merging PR14
#15
tobiasmarschall
closed
10 months ago
18
Gfa class order
#14
fawaz-dabbaghieh
closed
11 months ago
0
Issue running gaftools stat on gzip compressed file
#13
eblerjana
closed
8 months ago
4
Minor refactoring
#12
asylvz
closed
1 year ago
0
Various code refactoring
#11
asylvz
closed
1 year ago
0
Integrating GFA class
#10
fawaz-dabbaghieh
closed
6 months ago
4
Gfa class
#9
fawaz-dabbaghieh
closed
1 year ago
0
Common gaf
#8
asylvz
closed
1 year ago
0
Fixed parse_gaf()
#7
asylvz
closed
1 year ago
0
Common gaf
#6
tobiasmarschall
closed
1 year ago
0
Testcases
#5
tobiasmarschall
closed
1 year ago
0
Feature Request: Orient a GFA
#4
mir-cat
opened
1 year ago
1
gaftools convert places strand column in 4th field
#3
cgroza
closed
1 year ago
1
can not found gfa_sort function in sort.py
#2
sdws1983
closed
1 year ago
4
SNP calling
#1
colindaven
closed
1 year ago
1