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matsengrp
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cft
Clonal family tree
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Add amino acid alignment coloring; fixes #109
#112
metasoarous
closed
7 years ago
0
Compute and track mutations
#111
metasoarous
closed
5 years ago
5
Persistent cluster ids; fixes #107
#110
metasoarous
closed
7 years ago
0
Color amino acid alignments
#109
metasoarous
closed
7 years ago
0
104 clickable svg
#108
metasoarous
closed
7 years ago
0
Persistent cluster ids (aka cluster urls that don't change every time the app reboots)
#107
metasoarous
closed
7 years ago
0
103 likelihood scores
#106
metasoarous
closed
7 years ago
0
101 aa translations
#105
metasoarous
closed
7 years ago
0
Drop ASCII art treealnvu and make SVG text nodes clickable
#104
metasoarous
closed
7 years ago
3
Add cluster step likelihood scores to table views
#103
metasoarous
closed
7 years ago
1
Parsimony trees instead of ML
#102
wsdewitt
closed
7 years ago
18
Display amino acid translations
#101
metasoarous
closed
7 years ago
1
Change to amino acid translation or create links to fasta lineages other than seed
#100
lauradoepker
closed
7 years ago
1
Integration with auspice for visualization
#99
matsen
closed
5 years ago
4
flesh out build info; fixes #94
#98
metasoarous
closed
7 years ago
0
make partis checkout a submodule; fixes #96
#97
metasoarous
closed
7 years ago
0
Make partis a submodule
#96
metasoarous
closed
7 years ago
0
fix wercker build
#95
metasoarous
closed
7 years ago
1
Add git commit sha to build_info
#94
metasoarous
closed
7 years ago
0
71 real build info
#93
metasoarous
closed
7 years ago
0
Add slack error notifications, remove cswarth from email notification…
#92
metasoarous
closed
7 years ago
0
add cli option for toggling test seed set; fixes #90
#91
metasoarous
closed
7 years ago
0
Add cli toggle for test data set vs full data set
#90
metasoarous
closed
7 years ago
0
Fix root edge in SVG
#89
wsdewitt
closed
7 years ago
0
svg-tree link/page and fit svg to container in main view; closes #87
#88
metasoarous
closed
7 years ago
0
Clicking SVG tree should open in new tab for zoom
#87
metasoarous
closed
7 years ago
0
fix seed names in dnaml2tree
#86
wsdewitt
closed
7 years ago
0
81 missing seeds
#85
metasoarous
closed
7 years ago
1
Add --seed parameter to ete3 svg tree script
#84
metasoarous
closed
7 years ago
2
scons crashing with default call
#83
wsdewitt
closed
7 years ago
1
fix missing cluster seeds; fixes #81
#82
metasoarous
closed
7 years ago
0
Fix clusters missing seeds
#81
metasoarous
closed
7 years ago
1
visualizing alternative naive sequences
#80
psathyrella
closed
5 years ago
14
4 multiple clusterings
#79
metasoarous
closed
7 years ago
0
4 multiple clusterings
#78
metasoarous
closed
7 years ago
0
75 use partis utils
#77
dawahs
closed
7 years ago
0
66 document parsing
#76
dawahs
closed
7 years ago
0
Use partis-utils to process output instead of building dataframe
#75
dawahs
closed
7 years ago
0
57 dnaml2tree
#74
wsdewitt
closed
7 years ago
0
Seed lineage fasta needs to contain naive sequence
#73
lauradoepker
closed
7 years ago
9
Add link to sequence data from GUI
#72
lauradoepker
closed
7 years ago
8
Replace fake build info footer with actual build information
#71
metasoarous
closed
7 years ago
2
add download for seed ancestral reconstruction; solves #63
#70
metasoarous
closed
7 years ago
0
Process and make navigable all partis partitions
#69
metasoarous
closed
7 years ago
2
ASCII art tree and ete SVG trees should have the same leaf order
#68
metasoarous
closed
7 years ago
1
Remove long root on ete SVG
#67
metasoarous
closed
7 years ago
12
Better documentation/error messaging when parsing input fails
#66
dawahs
closed
7 years ago
4
64 svg toggle
#65
metasoarous
closed
7 years ago
0
Add toggle for svg tree from ete3
#64
metasoarous
closed
7 years ago
5
Add Fasta download for ancestral reconstruction between naive and seed
#63
metasoarous
closed
7 years ago
0
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