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maxplanck-ie
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snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
http://snakepipes.readthedocs.io
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CI dag test
#901
WardDeb
closed
3 weeks ago
1
Develop
#900
katsikora
closed
1 year ago
0
Dev wd
#899
WardDeb
closed
1 year ago
0
Error in WGBS workflow (invalid 'times' argument)
#898
kaznt
closed
1 year ago
12
Update column offset nearestGene.R
#897
rbrauning
closed
3 weeks ago
0
snakePipes createEnvs - missing mamba not reported. mamba in base
#896
mirax87
closed
1 year ago
11
revisit qc when using spikein for norm/ cutntag
#895
katsikora
closed
1 year ago
0
3primeseq question
#894
sunta3iouxos
closed
1 year ago
1
3primeseq ks
#893
katsikora
closed
1 year ago
0
Merge the latest bugfix release into develop
#892
katsikora
closed
1 year ago
0
3primeseq
#891
dkoppstein
closed
1 year ago
0
DAG printing breaks for ChIP-seq with --cutntag --useSpikeInForNorm
#890
katsikora
closed
1 year ago
1
Sambamba flagstat (sorted)
#889
katsikora
closed
1 year ago
0
update snakemake and implement native slurm support
#888
katsikora
closed
1 month ago
0
DNA-mapping pipeline gets stuck at origFASTQ rule when using a custom cluster config yaml
#887
TobiasHohl
closed
2 weeks ago
5
Error with DNA mapping workflow: [main_samview] fail to read the header from "-"
#886
chondammab
closed
1 year ago
3
Fix #884
#885
katsikora
closed
1 year ago
3
createEnvs fails when channel_priority set to 'strict'
#884
isaacvock
closed
1 year ago
2
Conda dir
#883
katsikora
closed
1 year ago
0
bumped bugfix version
#882
katsikora
closed
1 year ago
0
Check for valid fastq files before workflow execution
#881
WardDeb
closed
1 year ago
2
How is memory allocation propagated?
#880
half-adder
closed
1 year ago
1
Develop
#879
katsikora
closed
1 year ago
0
update and reformat documentation
#878
katsikora
opened
1 year ago
0
Fix871 ks
#877
katsikora
closed
3 weeks ago
0
Config ks
#876
katsikora
closed
1 year ago
0
updated the news.rst file
#875
LeilyR
closed
1 year ago
0
snakePipes createEnvs raises FileNotFoundError
#874
half-adder
closed
1 year ago
2
changes in STAR command and version
#873
LeilyR
closed
1 year ago
0
fixes #871
#872
jeffhsu3
closed
1 year ago
5
filter bam rule in umi_tools.snakefile doesn't include bwa
#871
jeffhsu3
closed
3 days ago
1
Permissions Error with persistence.py script: os.makedirs(d, exist_ok=True) File "<frozen os>", line 215, in makedirs
#870
Batsi-vai
closed
1 year ago
1
Filtergtf
#869
WardDeb
closed
1 year ago
0
Release 2.7.1
#868
katsikora
closed
1 year ago
0
mm10 organism yaml blacklist
#867
katsikora
closed
1 year ago
0
Develop
#866
katsikora
closed
1 year ago
0
bumped minor version
#865
katsikora
closed
1 year ago
0
capped snakemake version
#864
katsikora
closed
1 year ago
0
Develop
#863
katsikora
closed
1 year ago
0
Error in ATAC-seq pipeline: /usr/bin/bash: line 22: printf: MACS2_QC/logs/BL611.MACS2_peak_qc.log: invalid number
#862
jurummel
closed
1 year ago
4
Error during DNA-Mapping workflow: bowtie2.index.err: No output file specified
#861
jurummel
closed
3 days ago
2
Develop
#860
katsikora
closed
1 year ago
0
multiBamSummary takes ages in mRNAseq
#859
katsikora
closed
1 year ago
1
enable spikein GTFs for mRNA-seq featureCounts
#858
dkoppstein
opened
1 year ago
2
copy sample sheet to the output folder
#857
katsikora
closed
1 year ago
0
Develop
#856
dkoppstein
closed
1 year ago
0
Condarecip
#855
WardDeb
closed
1 year ago
0
Develop
#854
WardDeb
closed
1 year ago
0
Docs 261
#853
WardDeb
closed
1 year ago
0
Develop
#852
WardDeb
closed
1 year ago
0
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