meringlab FlashWeave.jl issues

meringlab / FlashWeave.jl

Inference of microbial interaction networks from large-scale heterogeneous abundance data

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Use of FlashWeave or FlashWeaveHE

#41 YibiChen opened 3 months ago
0
Use of FlashWeave on meta-omic protein data?

#40 Rridley7 opened 5 months ago
1
visualisation

#39 ereyred closed 5 months ago
5
why not a flashWeave R package?

#38 Gian77 opened 8 months ago
5
insufficient number of observations error

#37 ereyred closed 7 months ago
3
relationship about parameters heterogeneous=true and make_sparse

#36 huizhen-yan closed 8 months ago
1
Interpreting track_rejections output

#35 michmmcknight closed 1 year ago
1
insufficient number of observations

#34 cmandreani closed 1 year ago
3
Use of relative abundances

#33 danpal96 closed 1 year ago
1
How to extract the environmentally driven edges identified by FlashWeave?

#32 huizhen-yan closed 1 year ago
3
Singularity/Docker

#31 rhernandvel opened 1 year ago
2
FlashWeave v0.19.0 fails biom_hdf5 test

#30 IsaacTowers closed 2 years ago
3
MethodError: no method matching nv(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64})

#29 markobudinich closed 3 years ago
3
learn_network defaults

#28 nick-youngblut opened 3 years ago
1
KeyError: key FlashWeave [2be3f83a-7913-5748-9f20-7d448995b934] not found

#27 nick-youngblut closed 3 years ago
1
metadata mapping by sample name

#26 nick-youngblut opened 3 years ago
4
Unknown function

#25 pameubillag closed 3 years ago
5
Using metadata with normalize = false fails

#24 markobudinich closed 3 years ago
3
LightGraphs.betweenness_centrality() runs indefinitely when passed a graph with negative values

#23 jonasjonker closed 3 years ago
9
new bug introduced with fix for #21

#22 jonasjonker closed 3 years ago
9
metadata is not masked when data is masked due too little datapoints.

#21 jonasjonker closed 3 years ago
3
BIOM v2.1 from Qiime2

#20 ARW-UBT closed 4 years ago
16
graph() function does not open up

#19 dominikmerges closed 4 years ago
3
Add compact show method for networks

#18 jtackm opened 4 years ago
0
ArgumentError: number of rows of each array must match (got (46, 47))

#17 lixiaopi1985 closed 4 years ago
3
integer as category instead of numeric

#16 tapj closed 4 years ago
4
first test with test set

#15 tapj closed 4 years ago
8
Can FlashWeave be used for ASV Tables

#14 NoahCooke closed 4 years ago
1
Failed to install FlashWeave

#13 Lin936 closed 4 years ago
3
Non Categorical Meta Variables

#12 pbelmann closed 4 years ago
1
Export ERROR

#11 pbelmann closed 4 years ago
4
Add metadata support for BIOM

#10 jtackm opened 4 years ago
0
Fix hangs in interleaved parallelism (Julia 1.2+)

#9 jtackm closed 4 years ago
0
Interpretation of high amount of edges where weight = 0

#8 morten-hoppe closed 4 years ago
1
Error tagging new release

#7 attobot closed 5 years ago
0
tag release

#6 musm closed 5 years ago
1
Fail to install FlashWeave

#5 SilasK closed 6 years ago
2
update to julia 1.0 (branch V07fixes)

#4 jtackm closed 6 years ago
0
Fix deprecations

#3 femtocleaner[bot] closed 6 years ago
1
Prepare for Julia 1.0

#2 jtackm closed 6 years ago
0
Error tagging new release

#1 attobot closed 6 years ago
0