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metagentools
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GraphBin2
☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
https://graphbin2.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Error running prepResult
#23
priscalim00
opened
1 month ago
0
ENH: Separate bins into individual FASTA files
#22
Vini2
closed
2 months ago
0
Added support for Canu and other assembler gfas
#21
amanzanom
opened
2 months ago
1
DEV: convert code to using cogent3 for sequence handling
#20
GavinHuttley
closed
2 months ago
0
Bump jinja2 from 3.1.3 to 3.1.4 in /docs
#19
dependabot[bot]
closed
5 months ago
0
Bump jinja2 from 3.0.3 to 3.1.3 in /docs
#18
dependabot[bot]
closed
5 months ago
0
ENH: Replace `argparse` with `click`
#17
Vini2
closed
1 year ago
0
Attribute error whilst running GraphBin2
#16
lewhiteside
closed
5 months ago
1
Feature Request: Meaningful stats, tables, and figures of binning performance
#15
colin-heberling
opened
1 year ago
0
Feature Request: Re-output contigs to fasta according to new bin assignments?
#14
colin-heberling
closed
2 months ago
1
prepResult.py produces output with single bin assignment from metabat2 initial binning
#13
colin-heberling
closed
5 months ago
2
ValueError: invalid literal for int() with base 10
#12
tpriest0
closed
2 months ago
5
Cannot find gfa2fasta.py
#11
lewhiteside
closed
2 months ago
2
key error
#10
asaldivar93
closed
1 year ago
2
Should GraphBin/GraphBin2 operate on the contigs of metaFlye assemblies?
#9
schorlton
closed
2 months ago
1
AttributeError: 'NoneType' object has no attribute 'group'
#8
wn835166087
closed
2 months ago
5
Feature request: Weigh binning confidence into GraphBin2 refinement
#7
schorlton
opened
2 years ago
0
add filter for short contigs?
#6
nick-youngblut
opened
3 years ago
2
allow for gzip'ed input
#5
nick-youngblut
opened
3 years ago
0
KeyError during "Propagating labels to unlabelled vertices"
#4
nick-youngblut
opened
3 years ago
2
feature request: select delimiter
#3
nick-youngblut
closed
3 years ago
2
contig naming issue
#2
nick-youngblut
closed
3 years ago
3
Support for megahit
#1
adityabandla
closed
1 month ago
7