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microbiome
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mia
Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
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MAE helper methods
#388
antagomir
opened
1 year ago
1
countDominantTaxa output table
#387
himmil
closed
1 year ago
17
clear template supporting new issues
#386
ake123
closed
1 year ago
2
agglomerateByRank issue
#385
flappysmurf
closed
1 year ago
2
Issue template
#384
antagomir
closed
1 year ago
0
Metaphlan & counts
#383
antagomir
closed
1 month ago
6
Streamline RDA significance attribute
#382
RiboRings
closed
1 year ago
14
Add signifance testing to RDA/CCA
#381
TuomasBorman
closed
1 year ago
2
transformCounts: fix error message
#380
TuomasBorman
closed
1 year ago
1
clusterFeatures wrapper
#379
BananaCancer
closed
1 year ago
3
Dmm improvement
#378
BananaCancer
closed
1 year ago
8
getPrevalence defaults
#377
antagomir
closed
1 year ago
1
transformCounts pseudocount
#376
TuomasBorman
closed
1 year ago
0
Add new demo dataset Tengeler2020
#375
Daenarys8
closed
1 year ago
7
Using decontam with SE object, is there a way to remove contaminant sequences?
#374
AnnaKaisanLahti
opened
1 year ago
2
Add loadFromHumann to contents
#373
TuomasBorman
closed
1 year ago
0
Unify documentation
#372
TuomasBorman
closed
1 month ago
2
Naming of importers
#371
TuomasBorman
closed
1 month ago
2
Add LoadFromHumann
#370
TuomasBorman
closed
1 year ago
0
Humann importer
#369
antagomir
closed
1 year ago
0
New demo data set
#368
antagomir
closed
1 year ago
4
Sticker to Bioc site
#367
antagomir
closed
1 year ago
1
loadFromMetaphlan fix
#366
TuomasBorman
closed
1 year ago
1
Creation of a wrapper for bluster
#365
BananaCancer
closed
1 year ago
10
Add option to run long tests
#364
Daenarys8
closed
1 year ago
3
Create a wrapper for the clusterRows method
#363
BananaCancer
closed
1 year ago
6
Fix loadFromBiom: prefix match
#362
TuomasBorman
closed
1 year ago
12
Summary fix 01 fix
#361
antagomir
closed
1 year ago
0
Exprs values
#360
antagomir
closed
1 year ago
0
SImplify mergeSE
#359
TuomasBorman
closed
1 year ago
1
adonis2/dbRDA/permanova automation wrappers?
#358
antagomir
closed
11 months ago
1
mergeSEs: improve
#357
TuomasBorman
opened
1 year ago
1
Harmonize Dataset Load command
#356
Daenarys8
closed
1 year ago
0
Update relabundance.R
#355
neyjay12
closed
1 year ago
0
: art: Added and modified the comments
#354
neyjay12
closed
1 year ago
10
: art : On the comments
#353
neyjay12
closed
1 year ago
0
Fix Faith
#352
TuomasBorman
closed
1 year ago
1
Faiths Diversity error
#351
microsud
closed
1 year ago
3
manpage improved
#350
antagomir
closed
1 year ago
0
Skip failed test due to absence of dependency package
#349
Daenarys8
closed
1 year ago
12
assay_name ignored pseudocout now fixed
#348
antagomir
closed
1 year ago
0
CLR: remove unnecessary warning
#347
TuomasBorman
closed
1 year ago
0
Unifrac fix
#346
TuomasBorman
closed
1 year ago
1
agglomerareByRank: multiple rowTrees
#345
TuomasBorman
closed
1 year ago
0
mergeSEs: simplify
#344
TuomasBorman
closed
1 year ago
2
altExp support for meltAssay
#343
antagomir
closed
2 months ago
3
loadFromBiom: ranks from prefixes
#342
TuomasBorman
closed
1 year ago
1
assay_name switch
#341
antagomir
closed
1 year ago
1
Porting functional diversity to mia?
#340
antagomir
opened
1 year ago
0
Bray-Curtis issue
#339
antagomir
opened
1 year ago
5
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