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microbiome
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mia
Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
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solving Failure in makePhyloseqFromTreeSE
#433
ake123
closed
11 months ago
0
Suggestion to remove `na.action` argument from `runRDA`
#432
RiboRings
opened
1 year ago
4
loadFromBiom bugfix
#431
TuomasBorman
closed
12 months ago
5
Failure in makePhyloseqFromTreeSE
#430
antagomir
closed
10 months ago
0
Batch transformations.
#429
antagomir
opened
1 year ago
9
mia website outdated
#428
antagomir
closed
10 months ago
2
Update mia-datasets docs
#427
RiboRings
closed
11 months ago
1
export mergeFeaturesByRank
#426
Daenarys8
closed
1 year ago
1
biom import examples
#425
antagomir
closed
11 months ago
1
merge.R examples
#424
antagomir
closed
1 year ago
1
Issue #372: Unifying parameters
#423
Daenarys8
closed
12 months ago
0
RDA, return weighted averages or linear combination scores
#422
TuomasBorman
closed
11 months ago
4
could not find function "transformAssay"
#421
gomong
closed
10 months ago
5
addPerSampleDominantFeatures / perSampleDominantFeatures new argument?
#420
antagomir
closed
4 months ago
1
Critical issue with mergeFeaturesByPrevalence
#419
antagomir
closed
1 month ago
15
Fixing Wrong deprecation message
#418
ake123
closed
12 months ago
7
Rarefaction as optional strategy for alpha diversity
#417
antagomir
closed
1 month ago
2
Wrong deprecation message with mergeFeatures
#416
antagomir
closed
10 months ago
5
perSampleDominantFeatures works only with taxonomyRanks
#415
antagomir
opened
1 year ago
2
Clarify manpage for mapTaxonomy
#414
antagomir
closed
7 months ago
2
remove getAbundance*
#413
microsud
closed
1 year ago
0
Make create_mofa_from_MultiAssayExperiment() accept alternative experiments
#412
artur-sannikov
opened
1 year ago
8
agglomerate* functions: behavior when NA
#411
TuomasBorman
closed
11 months ago
1
replace warning with .Deprecate
#410
ake123
closed
1 year ago
3
Remove getAbundanceSample and getAbundanceFeature
#409
antagomir
closed
10 months ago
10
merge by rowData
#408
Daenarys8
closed
1 year ago
7
agglomerateByPrevalence manpage lacks explanation
#407
antagomir
closed
4 months ago
0
rowData clean-up from character artifacts
#406
ChouaibB
closed
1 year ago
19
Revise naming conventions across the mia framework
#405
antagomir
closed
1 month ago
2
#392 Deprecate mergeRows/mergeCols and agglomerateByRank/Prevalence
#404
Daenarys8
closed
1 year ago
11
altExp support for meltAssay
#403
ake123
closed
1 year ago
4
Naming of the cluster function
#402
antagomir
closed
1 year ago
4
merge and cluster: separate or unified functions for rows / cols?
#401
antagomir
closed
1 month ago
3
merge by variable name
#400
antagomir
closed
1 year ago
3
Agglomeration methods
#399
antagomir
closed
1 month ago
2
getTaxonomyLabels issue
#398
antagomir
closed
1 year ago
4
Enabling rowData variables in mergeRow
#397
Daenarys8
closed
1 year ago
4
change transformCounts to transformAssay
#396
ake123
closed
1 year ago
1
Readme
#395
antagomir
closed
1 year ago
1
Rename transformCounts to transformAssay
#394
antagomir
closed
10 months ago
8
Deprecate Taxa names
#393
antagomir
closed
12 months ago
0
Deprecate mergeRows/mergeCols
#392
antagomir
closed
10 months ago
2
Alias for mergeRows/mergeCols
#391
antagomir
closed
1 year ago
1
getExperimentCrossAssociation to ignore 0s?
#390
antagomir
opened
1 year ago
1
Add wrapper for agglomerateByRank/mergeRows
#389
Daenarys8
closed
1 year ago
11
MAE helper methods
#388
antagomir
opened
1 year ago
1
countDominantTaxa output table
#387
himmil
closed
12 months ago
17
clear template supporting new issues
#386
ake123
closed
1 year ago
2
agglomerateByRank issue
#385
flappysmurf
closed
1 year ago
2
Issue template
#384
antagomir
closed
1 year ago
0
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