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microbiome
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mia
Microbiome analysis
https://microbiome.github.io/mia/
Artistic License 2.0
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Harmonizing documentation
#458
TuomasBorman
opened
9 months ago
1
Consider rworkflows
#457
TuomasBorman
closed
1 month ago
1
loadFromBiom fix
#456
TuomasBorman
closed
8 months ago
3
loadFromBiom fix
#455
TuomasBorman
closed
9 months ago
0
loadFromBiom fix
#454
TuomasBorman
closed
9 months ago
3
Export transformCounts
#453
TuomasBorman
closed
9 months ago
0
mergeSEs fix
#452
TuomasBorman
closed
8 months ago
0
Fix pseudocount bug for missing values in assay
#451
RiboRings
closed
9 months ago
0
Clean up the manpages
#450
antagomir
opened
9 months ago
3
Update transformAssay with pseudocount TRUE/FALSE option
#449
RiboRings
closed
9 months ago
1
function runMDS() do not work
#448
jlatreil
closed
9 months ago
7
Faith bugfix
#447
TuomasBorman
closed
10 months ago
2
Update biom import examples
#446
RiboRings
closed
9 months ago
3
Optimize mapTaxonomy
#445
antagomir
closed
1 week ago
0
loadFromBiom fix
#444
TuomasBorman
closed
10 months ago
0
subset functions and trees
#443
TuomasBorman
opened
10 months ago
1
loadFromBiom, minor fixes
#442
TuomasBorman
closed
10 months ago
0
Summary, remove unnecessary message
#441
TuomasBorman
closed
8 months ago
0
correction in Deprecation messages
#440
ake123
closed
8 months ago
4
Deprecation messages
#439
TuomasBorman
closed
9 months ago
3
agglomerateFunction when NAs
#438
TuomasBorman
closed
8 months ago
0
Reorganise vignettes on mia-datasets
#437
RiboRings
closed
10 months ago
1
loadFromBiom & mergeSEs bugfix
#436
TuomasBorman
closed
10 months ago
0
Minor modification
#435
TuomasBorman
closed
10 months ago
0
Build fix
#434
TuomasBorman
closed
10 months ago
0
solving Failure in makePhyloseqFromTreeSE
#433
ake123
closed
10 months ago
0
Suggestion to remove `na.action` argument from `runRDA`
#432
RiboRings
opened
10 months ago
2
loadFromBiom bugfix
#431
TuomasBorman
closed
10 months ago
5
Failure in makePhyloseqFromTreeSE
#430
antagomir
closed
9 months ago
0
Batch transformations.
#429
antagomir
opened
10 months ago
4
mia website outdated
#428
antagomir
closed
9 months ago
2
Update mia-datasets docs
#427
RiboRings
closed
10 months ago
1
export mergeFeaturesByRank
#426
Daenarys8
closed
10 months ago
1
biom import examples
#425
antagomir
closed
9 months ago
1
merge.R examples
#424
antagomir
closed
10 months ago
1
Issue #372: Unifying parameters
#423
Daenarys8
closed
10 months ago
0
RDA, return weighted averages or linear combination scores
#422
TuomasBorman
closed
10 months ago
4
could not find function "transformAssay"
#421
gomong
closed
9 months ago
5
addPerSampleDominantFeatures / perSampleDominantFeatures new argument?
#420
antagomir
closed
3 months ago
1
Critical issue with mergeFeaturesByPrevalence
#419
antagomir
opened
11 months ago
13
Fixing Wrong deprecation message
#418
ake123
closed
10 months ago
7
Rarefaction as optional strategy for alpha diversity
#417
antagomir
closed
1 week ago
2
Wrong deprecation message with mergeFeatures
#416
antagomir
closed
9 months ago
5
perSampleDominantFeatures works only with taxonomyRanks
#415
antagomir
opened
11 months ago
1
Clarify manpage for mapTaxonomy
#414
antagomir
closed
5 months ago
2
remove getAbundance*
#413
microsud
closed
11 months ago
0
Make create_mofa_from_MultiAssayExperiment() accept alternative experiments
#412
artur-sannikov
opened
11 months ago
8
agglomerate* functions: behavior when NA
#411
TuomasBorman
closed
10 months ago
1
replace warning with .Deprecate
#410
ake123
closed
11 months ago
3
Remove getAbundanceSample and getAbundanceFeature
#409
antagomir
closed
9 months ago
10
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