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microbiomedata
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metaMAGs
Workflow for metagenome assembled genomes generation.
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Speed up packaging
#46
scanon
opened
1 hour ago
0
Speedup packing
#45
scanon
opened
18 hours ago
0
Fix staging
#44
scanon
closed
3 days ago
1
37 create tarfilespy not generating correct output when using nmdc style identifiers
#43
chienchi
opened
5 days ago
0
41 fix jaws validation error
#42
aclum
closed
1 week ago
0
fix wdl validation error
#41
aclum
closed
1 week ago
0
Add wdl linter github action
#40
aclum
closed
5 days ago
0
Add wdl linter github action
#39
aclum
closed
5 days ago
0
add condition to check barplot.pdf file generated.
#38
chienchi
closed
5 days ago
0
create_tarfiles.py not generating correct output when using nmdc style identifiers
#37
aclum
opened
2 weeks ago
9
Fix file name for eukcc
#36
scanon
closed
4 weeks ago
0
fix LQ bin count and condition
#35
chienchi
closed
1 month ago
0
Sample without LQ mags failed on metaMAGs
#34
chienchi
closed
1 month ago
0
update eukcc treehandler.py script to avoid quoted-node-names issue
#33
chienchi
closed
2 months ago
1
eukCC failed on quoted node names.
#32
chienchi
closed
2 months ago
1
Add eukcc component to binning workflow
#31
chienchi
closed
3 months ago
0
29 add support for passing a contig name mapping file to mbinpy
#30
chienchi
closed
3 months ago
1
Add support for passing a contig name mapping file to mbin.py
#29
aclum
closed
3 months ago
1
add eukcc component to binning workflow
#28
aclum
closed
3 months ago
2
updated container from Neha that has the eukcc component
#27
chienchi
closed
3 months ago
0
Error in package tasks
#26
scanon
closed
5 days ago
4
remove JGI mbin files from Docker folder
#25
aclum
closed
3 months ago
3
Remove source mbin files
#24
aclum
closed
4 months ago
0
22 review mag output files
#23
chienchi
closed
5 months ago
0
review MAG output files
#22
aclum
closed
4 months ago
4
66 fix checkm db path and add new data visualizations
#21
chienchi
closed
5 months ago
0
66 fix checkm db path and add new data visualizations
#20
chienchi
closed
5 months ago
1
silent error during call-mbin_nmdc
#19
aclum
closed
5 months ago
5
17 mags stats files content are empty even there are binning result
#18
chienchi
closed
6 months ago
0
MAGs_stats files content are empty even there are binning result.
#17
chienchi
closed
6 months ago
0
added release workflow
#16
Michal-Babins
closed
1 month ago
0
Make release workflow
#15
Michal-Babins
closed
1 month ago
0
Update wdl and docker to v0.4 of mags binning pipeline
#14
Michal-Babins
closed
1 year ago
2
Werkflow to master for mags
#13
Michal-Babins
closed
1 year ago
0
Prepare mags workflow for updated version of MAGS for NEON
#12
Michal-Babins
closed
12 months ago
2
Review updates to MAGS workflow and update nmdc schema accordingly.
#11
Michal-Babins
closed
1 year ago
3
Output changes
#10
scanon
closed
1 month ago
0
Package MAGs with annotations
#9
scanon
closed
1 year ago
2
Issue with metaG MAGS on EDGE
#8
ssarrafan
closed
2 years ago
1
Generate TSV report of the bins
#7
scanon
closed
2 years ago
1
Extract phylum data from MAG to support taxonomic search
#6
hubin-keio
opened
2 years ago
5
Finish end-to-end workflows for MG
#5
ssarrafan
closed
3 years ago
2
Readme for mags test validation
#4
Michal-Babins
closed
3 years ago
0
validation wdl for MAGS
#3
Michal-Babins
closed
3 years ago
0
Workflows - Test small data sets for workflows (metaMAGs)
#2
ssarrafan
closed
3 years ago
3
Workflows - Test large data sets for workflows (metaMAGs)
#1
ssarrafan
closed
3 years ago
3