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mllg
/
batchtools
Tools for computation on batch systems
https://mllg.github.io/batchtools/
GNU Lesser General Public License v3.0
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slurm: Socket timed out on send/recv operation
#201
jasonserviss
opened
6 years ago
16
Document currently recommended way to re-submit failed jobs
#200
bjoernholzhauer
closed
5 years ago
1
LiDO3 error
#199
surmann
closed
5 years ago
2
max.concurrent.jobs issue with SLURM arrays
#198
jgrn307
opened
6 years ago
1
Error in readLog() on an SGE cluster
#197
wlandau
closed
6 years ago
9
getStatus() for slurm TIMEOUT?
#196
jgrn307
opened
6 years ago
5
Jobs with calls to withr::with_options(NULL, ...) crash
#195
renozao
closed
6 years ago
4
Support more result formats
#194
mllg
opened
6 years ago
0
Allow warnings to be treated as warnings only, not errors
#193
ryananeff
closed
6 years ago
2
SLURM jobs -- direct them to a specific folder?
#192
jgrn307
closed
6 years ago
10
Detchunks
#191
surmann
closed
6 years ago
4
Support job depencencies
#190
mllg
opened
6 years ago
4
Suggestion: allow a custom "Rscript" command in templates
#189
jgrn307
closed
6 years ago
5
Array jobs not enabled in makeClusterFunctionsSLURM?
#188
jgrn307
closed
6 years ago
17
How are results retrieved from workers
#187
statquant
opened
6 years ago
6
cleanup for new data.table
#186
mllg
closed
6 years ago
0
how to specify queue on SGE?
#185
tikacp
closed
6 years ago
2
Registry not writeable
#184
dajmcdon
closed
6 years ago
3
WISH: Use special devel version, e.g. 0.9.8-9000
#183
HenrikBengtsson
closed
6 years ago
1
clusterFunctionsSSH don't work with remote System
#182
ja-thomas
closed
6 years ago
10
conda env activation in template?
#181
nick-youngblut
opened
6 years ago
12
Slurm clusters as resource
#180
mllg
closed
6 years ago
1
exported cluster args
#179
mllg
closed
6 years ago
1
add shuffle parameter to chunk function
#178
surmann
closed
6 years ago
1
add shuffle parameter to chunk
#177
surmann
closed
6 years ago
0
Control verbosity of output in `waitForJobs()` and `submitJobs()`
#176
nturaga
closed
6 years ago
2
force evaluation of environment variables on remote
#175
fouodo
closed
6 years ago
2
Implement `resubmitJobs()`
#174
mllg
opened
6 years ago
2
More flexible Job listing/killing for Slurm
#173
ja-thomas
opened
6 years ago
14
Robustify ssh
#172
mllg
closed
6 years ago
1
is there a better way to name the results rds file
#171
smilesun
opened
6 years ago
1
Number of problems and algorithms not correct
#170
ghost
closed
6 years ago
1
getStatus() running jobs in expired
#169
smilesun
closed
5 years ago
4
Use fs internally
#168
mllg
closed
6 years ago
1
unwrap() param name clash / allow prefix=TRUE again
#167
jakob-r
closed
6 years ago
2
rmarkdown/knitr workflow with batchtools and caching
#166
cfhammill
closed
6 years ago
9
Export assertRegistry
#165
cfhammill
closed
6 years ago
3
Reuse Resources
#164
surmann
closed
6 years ago
2
max.concurrent.jobs for array jobs
#163
mnwright
closed
6 years ago
7
'flatten(getJobTable())' throws error
#162
surmann
closed
6 years ago
0
Question: Example for using batch system
#161
pekosro
closed
6 years ago
1
update torque-lido template
#160
surmann
closed
6 years ago
0
Name clash with purrr::flatten()
#159
mllg
closed
5 years ago
0
Collect MaxRSS/Elapsed from sacct when using SLURM?
#158
kendonB
opened
6 years ago
0
R API for peeking at logs?
#157
kendonB
opened
6 years ago
9
Search path (fixes #155)
#156
mllg
closed
6 years ago
1
DISCUSSION: Alt path for template & config files via `R_BATCHTOOLS_SEARCH_PATH`?
#155
HenrikBengtsson
closed
6 years ago
4
Store a backup of registry.rds
#154
jakob-r
closed
6 years ago
5
Nested list changes behaviour of `reduceResultsDataTable`?
#153
giuseppec
closed
6 years ago
3
Nested data tables
#152
mllg
closed
6 years ago
0
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