mmcdermott EventStreamGPT issues

mmcdermott / EventStreamGPT

Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex internal dependencies.

https://eventstreamml.readthedocs.io/en/latest/

MIT License

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Test cases and (eventually) fixes for #114

#117 mmcdermott opened 6 days ago
2
Test cases and (eventually) fixes for #114

#116 mmcdermott closed 6 days ago
1
Some small changes to update things for more recent versions of packages.

#115 mmcdermott closed 6 days ago
1
Subject ID splits can get messed up if subjects are not simple int types.

#114 mmcdermott opened 1 week ago
0
Processing Synthetic Data with ESGPT

#113 sujaybanerjee opened 1 week ago
1
Task `to_int_index` does not pass tests with more recent versions of polars

#112 mmcdermott opened 1 week ago
0
Support control for how events are aggregated/combined into compound events

#111 juancq closed 1 week ago
1
end_time in task dataframes is not counted as an event (right open interval)

#110 juancq opened 1 month ago
1
Setting min_seq_len in PytorchDatasetConfig to < 2 with task dataframes leads to keyerror

#109 juancq opened 1 month ago
3
Could not override 'config.task_specific_params.pooling_method' when lauching wandb agent

#108 Rhett-Ying opened 1 month ago
2
Adjusted join in flat reps to account for different timestamps with t…

#107 pargaw opened 1 month ago
1
nvalid series dtype: expected `Utf8`, got `datetime[ns]`

#106 rvandewater closed 4 weeks ago
2
Add computation over future summary windows to flat reps

#105 mmcdermott closed 2 months ago
2
Nested ragged tensors integration does not respect `seq_padding_side`

#104 mmcdermott opened 2 months ago
1
Specify test set exclusions

#103 mmcdermott closed 2 months ago
1
Fixes a metrics thing and enables tuning subset sizes as well for speed.

#102 mmcdermott closed 2 months ago
1
Polars upgrade to 0.20+

#101 mmcdermott closed 2 months ago
1
Removed the brittle polars dataset test.

#100 mmcdermott closed 2 months ago
0
Split improperly shared parameters.

#99 mmcdermott closed 2 months ago
1
Added seeding to caching of data.

#98 mmcdermott closed 2 months ago
1
Removed pre-processors as there was only one option in use now and these will be phased out with MEDS

#97 mmcdermott closed 2 months ago
1
Getting started steps

#96 rvandewater opened 2 months ago
1
sklearn baseline pipe code should be using logger

#95 mmcdermott opened 2 months ago
0
Fixed a doc mismatch and a scripts typo.

#94 mmcdermott closed 2 months ago
1
May be able to make temporal loss more stable by directly computing log-prob from pre-activation function outputs

#93 mmcdermott opened 4 months ago
2
Dev

#92 payalchandak closed 5 months ago
0
Should be possible to resume pre-training and evaluate a pre-trained model post-hoc

#91 mmcdermott opened 5 months ago
0
Fixes the slowdowns and bugs caused by the prior improved compute practices, but requires a nested tensor package.

#90 mmcdermott closed 4 weeks ago
12
Merging recent changes into main

#89 mmcdermott closed 6 months ago
0
Force foreign-key constraints among dfs

#88 Jwoo5 closed 6 months ago
0
Updated some deprecated polars functions.

#87 mmcdermott closed 6 months ago
0
Nested caching

#86 pargaw closed 6 months ago
0
Adds support and a script for exporting an ESDS dataset from an ESGPT dataset (with support for modifier columns).

#85 mmcdermott closed 6 months ago
0
v0.5 changes: logging, computational improvements, and more

#84 mmcdermott closed 6 months ago
1
Added logging to other aspects of ESGPT.

#83 mmcdermott closed 6 months ago
0
Remove the `with_row_count` to create new event IDs to speed up dataset creation and permit lazy frames to be used longer.

#82 mmcdermott closed 6 months ago
0
Remove unnecessary subject ID conversion to streamline dataset creation.

#81 mmcdermott closed 6 months ago
0
Proper logs

#80 mmcdermott closed 7 months ago
0
Enable flash attention

#79 mmcdermott closed 7 months ago
0
Removed the old increment calls to assign event IDs in favor of hashes of subject IDs and timestamps which can be run lazily.

#78 mmcdermott closed 7 months ago
0
Duplication bug in task caching

#77 mmcdermott closed 7 months ago
0
Improve all aspects of compute performance (save disk space cost) for pytorch datasets by pre-caching processed items.

#76 mmcdermott closed 7 months ago
10
PytorchDataset doesn't have a way to extract subject_ids, start_time, and end_time all together

#75 pargaw opened 8 months ago
0
Replace use of list for cached_data and subject_ids in pytorch dataset with polars objects

#74 juancq closed 7 months ago
3
DataLoader with num_workers > 0 increases memory consumption over time

#73 juancq opened 8 months ago
2
Misspelled measurement_configs in transformer/config.py

#72 juancq closed 8 months ago
1
Fixed mutable defaults so that the tests do not error on py311.

#71 mmcdermott closed 8 months ago
1
Added flash attention.

#70 mmcdermott closed 7 months ago
2
Re-organized the flat representation and sklearn code and added the capability to cache task specific flat representations.

#69 mmcdermott closed 9 months ago
1
Some improvements to the flat representation creation process.

#68 mmcdermott closed 9 months ago
0