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mmore500
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hstrat
hstrat enables phylogenetic inference on distributed digital evolution populations
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Add Dockerfile
#174
mmore500
closed
1 day ago
1
Feature: create hstrat container
#173
mmore500
closed
1 day ago
0
Feature: invoking hstrat as a module should give a list of available commands
#172
mmore500
closed
1 day ago
0
Add dataframe tests to ci
#171
mmore500
closed
5 days ago
1
Changed type hints from `np.array` to `np.ndarray`
#170
vivaansinghvi07
closed
6 days ago
3
Incoporate CPP into end-to-end workflow
#169
mmore500
closed
1 week ago
1
Bump downstream pin
#168
mmore500
closed
1 week ago
1
dataframe utils
#167
mmore500
opened
1 week ago
0
Bump networkx dependency
#166
mmore500
closed
1 week ago
1
Added a type stub for the flat namespace and added better checks
#165
vivaansinghvi07
closed
1 week ago
1
Feature: Flat namespace type stub
#164
vivaansinghvi07
closed
2 weeks ago
1
WIP Add dataframe cli for reconstruction pipeline
#163
mmore500
closed
1 week ago
3
Planning: hsurf reconstruction workflow
#162
mmore500
closed
1 week ago
1
Fix missing .pyi files on PyPI
#161
mmore500
closed
2 weeks ago
1
Apply BioPython import fix
#160
mmore500
closed
3 weeks ago
0
Also catch BioPhylo ValueError on import
#159
mmore500
closed
3 weeks ago
1
Streamline __init__.py
#158
mmore500
closed
3 weeks ago
0
Suggestion: consolidate lazy loading laundering
#157
mmore500
closed
3 weeks ago
1
np.array type hints should be np.ndarray
#156
mmore500
closed
6 days ago
0
Switch linting to ruff
#155
mmore500
closed
4 weeks ago
1
Feature: Lazy loading
#154
vivaansinghvi07
closed
3 weeks ago
4
Prototype build/search trie algorithm
#153
mmore500
closed
1 month ago
1
Feature: Alternate Approaches/Optimizations for Tree Reconstruction Algorithms
#152
vivaansinghvi07
opened
1 month ago
1
Documentation work items
#151
joeymsu
opened
1 month ago
1
Update grammar - quickstart.ipynb
#150
joeymsu
closed
1 month ago
1
Add black and ruff to testing requirements
#149
mmore500
opened
1 month ago
0
WIP: optimize reconstruction, add CLI workflow
#148
vivaansinghvi07
opened
1 month ago
2
Fix Codacy lint
#147
mmore500
closed
4 months ago
1
Impl, test alifestd_downsample_tips_asexual
#146
mmore500
closed
4 months ago
1
Bump codecov action v3 -> v4
#145
mmore500
closed
7 months ago
0
Add schema for column and population JSON data
#144
mmore500
opened
7 months ago
0
Impl, test alifestd_coerce_chronological_consistency
#143
mmore500
closed
8 months ago
1
Bugfix: sample pair from sampled triplet, not all leaves
#142
mmore500
closed
8 months ago
1
Impl, test alifestd_sample_triplet_comparisons
#141
mmore500
closed
8 months ago
1
Validate triplet dist estimation
#140
mmore500
closed
8 months ago
1
Add flag for differentiae byte bit order for deserialization
#139
mmore500
closed
9 months ago
1
Add to/from int serialization
#138
mmore500
closed
9 months ago
1
Promote on alife encyclopedia
#137
mmore500
opened
9 months ago
0
Add origin time sampling trie post process
#136
mmore500
closed
9 months ago
1
Add helper to sum origin time deltas
#135
mmore500
closed
9 months ago
1
Impl, test taxon label option for triplet distance
#134
mmore500
closed
10 months ago
1
Add tree distance estimation functionality
#133
mmore500
closed
10 months ago
1
Impl, test alifestd count nodes tools
#132
mmore500
closed
10 months ago
1
Disable coverage upload on scheduled CI
#131
mmore500
opened
10 months ago
0
Improve new user documentation experience
#130
mmore500
closed
10 months ago
2
Add diagnostic features to alifestd support
#129
mmore500
closed
1 year ago
1
Impl, test alifestd_mark_root_id
#128
mmore500
closed
1 year ago
1
Add more alifestd df features to auxlib
#127
mmore500
closed
1 year ago
1
Fix serialization_pop example, which is failing on GH actions
#126
mmore500
opened
1 year ago
0
Add alifestd phylogeny features to auxlib
#125
mmore500
closed
1 year ago
1
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