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mmore500
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hstrat
hstrat enables phylogenetic inference on distributed digital evolution populations
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Improve performance of unpack_differentiae
#101
rodsan0
closed
1 year ago
1
Add modules dimension to build matrix
#100
mmore500
closed
1 year ago
2
Add helper function to estimate geometric prior param from population size and num generations elapsed
#99
mmore500
opened
1 year ago
0
Add mandatory prior arg to calc bounds functions in pairwise phylogenetic inference
#98
mmore500
closed
1 year ago
0
Benchmark differentiae unpacking
#97
mmore500
closed
1 year ago
1
Split each submodule's test into its own GH actions job
#96
mmore500
closed
1 year ago
1
Optimize pack differentiae
#95
mmore500
closed
1 year ago
1
Patch 1.5.0
#94
mmore500
closed
1 year ago
1
Implement alifestd_validate
#93
mmore500
closed
1 year ago
1
Quality of life improvements to test drive tools
#92
mmore500
closed
1 year ago
1
Implement and test seed_random
#91
mmore500
closed
1 year ago
1
Implement, test simple phylogeny generator
#90
mmore500
closed
1 year ago
1
Implement perfect phylogenetic tracking tools
#89
mmore500
closed
1 year ago
1
Move semiheavy to scheduled build, not CI
#88
mmore500
closed
1 year ago
0
Only exclude tests with all combo heavy flags
#87
mmore500
closed
1 year ago
1
Feature: add patristic distance to pairwise comparisons
#86
mmore500
closed
1 year ago
0
[WIP] Add tools to generate extant column pop from phylogeny
#85
mmore500
closed
1 year ago
1
Feature: add examples/ descriptions to docs
#84
mmore500
opened
1 year ago
0
Cleanup unused, out of sync dependencies
#83
mmore500
closed
1 year ago
1
Migrate to bumpver
#82
mmore500
closed
1 year ago
0
Add serialization example
#81
mmore500
closed
1 year ago
1
Implement tree reconstruction support
#80
rodsan0
closed
1 year ago
2
Update serialization branch
#79
mmore500
closed
1 year ago
0
[WIP] Cherry-picked serialization commits
#78
rodsan0
closed
1 year ago
1
Link pointing to the wrong repository?
#77
osorensen
closed
1 year ago
1
Reference formatting
#76
osorensen
closed
1 year ago
0
Reference formatting
#75
osorensen
closed
1 year ago
0
Reference formatting
#74
osorensen
closed
1 year ago
0
Reference formatting
#73
osorensen
closed
1 year ago
0
Reference formatting
#72
osorensen
closed
1 year ago
0
Reference formatting
#71
osorensen
closed
1 year ago
0
Non-existent DOI
#70
osorensen
closed
1 year ago
0
Non-existent DOI
#69
osorensen
closed
1 year ago
0
Editorial comments on JOSS submission
#68
osorensen
closed
1 year ago
0
Editorial comments on JOSS submission
#67
osorensen
closed
1 year ago
0
bumpversion creates tidyness whitespae error
#66
mmore500
closed
1 year ago
0
Create Ascii example
#65
mmore500
closed
1 year ago
1
Implement population inference and create examples directory
#64
mmore500
closed
1 year ago
1
Release mpl figs to fix open figures warning
#63
mmore500
closed
1 year ago
1
Warn missing requirements
#62
mmore500
closed
1 year ago
2
Examples
#61
kgd-al
closed
1 year ago
5
Additional tests tweaking
#60
kgd-al
closed
1 year ago
2
Silence expected warnings and fix other warnings
#59
mmore500
closed
1 year ago
1
Test over py 3.7 thru 3.11 on CI
#58
mmore500
closed
1 year ago
2
Fixup test structure, dev dependencies
#57
mmore500
closed
1 year ago
1
Test with latest versions of Python
#56
JJ
closed
1 year ago
2
Address test warnings
#55
JJ
closed
1 year ago
0
Unify handling of dependencies
#54
JJ
closed
1 year ago
4
Fix typographic error :bug:
#53
JJ
closed
1 year ago
1
Tests are a bit confusing
#52
JJ
closed
1 year ago
0
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