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mmore500
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hstrat
hstrat enables phylogenetic inference on distributed digital evolution populations
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Typo in docstring
#151
joeymsu
opened
4 days ago
1
Update grammar - quickstart.ipynb
#150
joeymsu
closed
5 days ago
1
Add black and ruff to testing requirements
#149
mmore500
opened
1 week ago
0
WIP: adding initial matrix apporach
#148
vivaansinghvi07
opened
1 week ago
1
Fix Codacy lint
#147
mmore500
closed
2 months ago
1
Impl, test alifestd_downsample_tips_asexual
#146
mmore500
closed
2 months ago
1
Bump codecov action v3 -> v4
#145
mmore500
closed
5 months ago
0
Add schema for column and population JSON data
#144
mmore500
opened
6 months ago
0
Impl, test alifestd_coerce_chronological_consistency
#143
mmore500
closed
6 months ago
1
Bugfix: sample pair from sampled triplet, not all leaves
#142
mmore500
closed
6 months ago
1
Impl, test alifestd_sample_triplet_comparisons
#141
mmore500
closed
7 months ago
1
Validate triplet dist estimation
#140
mmore500
closed
7 months ago
1
Add flag for differentiae byte bit order for deserialization
#139
mmore500
closed
7 months ago
1
Add to/from int serialization
#138
mmore500
closed
7 months ago
1
Promote on alife encyclopedia
#137
mmore500
opened
7 months ago
0
Add origin time sampling trie post process
#136
mmore500
closed
7 months ago
1
Add helper to sum origin time deltas
#135
mmore500
closed
7 months ago
1
Impl, test taxon label option for triplet distance
#134
mmore500
closed
8 months ago
1
Add tree distance estimation functionality
#133
mmore500
closed
8 months ago
1
Impl, test alifestd count nodes tools
#132
mmore500
closed
8 months ago
1
Disable coverage upload on scheduled CI
#131
mmore500
opened
9 months ago
0
Improve new user documentation experience
#130
mmore500
closed
8 months ago
2
Add diagnostic features to alifestd support
#129
mmore500
closed
1 year ago
1
Impl, test alifestd_mark_root_id
#128
mmore500
closed
1 year ago
1
Add more alifestd df features to auxlib
#127
mmore500
closed
1 year ago
1
Fix serialization_pop example, which is failing on GH actions
#126
mmore500
opened
1 year ago
0
Add alifestd phylogeny features to auxlib
#125
mmore500
closed
1 year ago
1
Implement alifestd prune extinct taxa helper
#124
mmore500
closed
1 year ago
1
Implement alifestd prune extinct utility
#123
mmore500
closed
1 year ago
1
Add binary serialization example to `examples/`
#122
mmore500
opened
1 year ago
0
Impl, test col_from_packet_buffer
#121
mmore500
closed
1 year ago
1
Implement serialization to binary packet
#120
mmore500
closed
1 year ago
1
Patch incompat by pinning pandas<2
#119
mmore500
closed
1 year ago
1
Fix pandas v2.x compatibility
#118
mmore500
opened
1 year ago
0
Fix nonsensical geom seq nth root algo docstring
#117
mmore500
opened
1 year ago
0
Implement, test num_to_condemn bit magic recipe
#116
mmore500
closed
1 year ago
1
Fixup calc provided uncertainty
#115
mmore500
closed
1 year ago
1
Set up linting
#114
mmore500
opened
1 year ago
0
Build test control2
#113
mmore500
closed
1 year ago
0
Test regression test for install from source bug
#112
mmore500
closed
1 year ago
1
Write regression test for install from dist bug
#111
mmore500
closed
1 year ago
1
Add dripplot features
#110
mmore500
closed
1 year ago
1
Dict ordered store rank for DepositStratum is not Optional
#109
mmore500
opened
1 year ago
0
Factor out helper libraries
#108
mmore500
opened
1 year ago
0
Make a pass to fix or silence test warnings
#107
mmore500
opened
1 year ago
0
Clean up dead test code in `test_iter_ranks_of_retained_commonality_between_generic.py`
#106
mmore500
opened
1 year ago
0
Update examples for new tree reconstruction tools
#105
mmore500
opened
1 year ago
0
Factor out nx random tree generator to `hstrat/test_drive/generate_template_phylogeny/`
#104
mmore500
opened
1 year ago
0
Loosen seaborn requirements
#103
mmore500
closed
1 year ago
1
Should have a FrozenHereditaryStratigraphicColumn
#102
mmore500
closed
1 year ago
0
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