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monarch-initiative
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koza
Data transformation framework for LinkML data models
https://koza.monarchinitiative.org/
BSD 3-Clause "New" or "Revised" License
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Produce friendlier error from csv_reader on missing column
#110
caufieldjh
closed
1 year ago
1
adding sssom support
#109
glass-ships
closed
1 year ago
6
Add SSSOM sssupport
#108
kevinschaper
closed
1 year ago
7
Relax dependencies to get along with the latest kgx release
#107
kevinschaper
closed
1 year ago
0
Logging
#106
glass-ships
closed
1 year ago
1
QoL updates
#105
glass-ships
closed
1 year ago
0
Metadata.yaml opened as TextIOWrapper rather than a str
#104
hrshdhgd
closed
1 year ago
0
`**yaml.safe_load(`string-path`)` will not load the YAML file.
#103
hrshdhgd
closed
1 year ago
1
Generate new ingests from templates
#102
kevinschaper
opened
1 year ago
1
Add cli & docstrings documentation
#101
kevinschaper
closed
1 year ago
2
Upgrade typer to 0.7, no longer needs to be locked lower
#100
kevinschaper
closed
2 years ago
0
update linkml-validator, bug has been fixed
#99
glass-ships
closed
2 years ago
0
Further QoL updates to io modules
#98
glass-ships
closed
2 years ago
0
General QoL updates (WIP)
#97
glass-ships
closed
2 years ago
1
Bump pyyaml to 6.0
#96
caufieldjh
closed
2 years ago
1
Remove beta disclaimer
#95
kevinschaper
closed
2 years ago
0
Add license to repo
#94
matentzn
closed
2 years ago
1
Add support for BaseModel entities
#93
kevinschaper
closed
2 years ago
0
Create CITATION.cff
#92
nlharris
closed
2 years ago
2
Refactoring Koza / KozaApp
#91
glass-ships
closed
2 years ago
0
Nested props
#90
glass-ships
closed
2 years ago
0
Logfile requires path structure
#89
sierra-moxon
closed
2 years ago
0
Update build.yml to test against Py 3.10
#88
glass-ships
closed
2 years ago
0
Raise an error if an entity property isn't defined in node/edge properties
#87
kevinschaper
opened
2 years ago
3
Add support for nested classes to KGXConverter
#86
kevinschaper
closed
1 year ago
1
List only the columns that are needed for ingest in yaml config
#85
putmantime
closed
2 years ago
1
Koza --log flag (WIP)
#84
glass-ships
closed
2 years ago
0
Add support in the Koza singleton for multiple ingests running at once
#83
kevinschaper
closed
2 years ago
1
Logging updates: quiet mode and option to write log files
#82
kevinschaper
closed
2 years ago
3
Add "file_archive" attribute for SourceConfig
#81
glass-ships
closed
2 years ago
0
required_properties for nested JSON files tags
#80
RichardBruskiewich
closed
2 years ago
3
Add tar.gz compression support
#79
kevinschaper
closed
2 years ago
0
validate before write with linkml-validator
#78
glass-ships
closed
2 years ago
1
Add linkml-validator support
#77
kevinschaper
closed
2 years ago
0
add edge only compatibility to jsonl writer as well
#76
glass-ships
closed
2 years ago
1
allow for edge only ingests now
#75
glass-ships
closed
2 years ago
0
add github url
#74
cmungall
closed
2 years ago
0
Feature/line limit
#73
glass-ships
closed
2 years ago
1
TEST Monday
#72
putmantime
closed
2 years ago
0
Feature/tsv writer
#71
glass-ships
closed
2 years ago
1
Add error handling to writer for attributes that are used but in node/edge properties
#70
kevinschaper
closed
2 years ago
1
Change build system from flit to poetry
#69
kevinschaper
closed
2 years ago
0
Feature/tsv writer
#68
glass-ships
closed
2 years ago
1
Increase field size limit
#67
kevinschaper
closed
2 years ago
1
Missing intermediate Biolink Model ancestors in category field of node records
#66
RichardBruskiewich
opened
2 years ago
1
Duplication of nodes records in Koza transformation output
#65
RichardBruskiewich
opened
2 years ago
1
Add support for skipping a transform if input hasn't changed
#64
kevinschaper
closed
1 year ago
1
koza validate fails with skip_lines error
#63
kevinschaper
closed
2 years ago
0
Missing biolink_model_pydantic when calling transform_source
#62
caufieldjh
closed
2 years ago
8
Pass comment_char to reader
#61
kevinschaper
closed
3 years ago
0
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