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monarch-initiative
/
oncoexporter
A package to convert cancer data to GA4GH phenopacket
https://monarch-initiative.github.io/oncoexporter
MIT License
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specimen: anatomical_site
#43
pnrobinson
opened
1 year ago
1
specimen: primary_disease_type
#42
pnrobinson
opened
1 year ago
0
specimen: days_to_collection field
#41
pnrobinson
opened
1 year ago
3
member_of_research_project
#40
pnrobinson
opened
1 year ago
1
method_of_diagnosis
#39
pnrobinson
opened
1 year ago
0
Add grade to disease object
#38
pnrobinson
opened
1 year ago
1
How to model Cancer stage
#37
pnrobinson
opened
1 year ago
4
Add stage to Disease object
#36
pnrobinson
closed
10 months ago
2
Add onset to disease message
#35
pnrobinson
opened
1 year ago
3
Where to store project data
#34
pnrobinson
opened
1 year ago
1
Develop
#33
pnrobinson
closed
1 year ago
0
morphology and ICD-0
#32
pnrobinson
closed
10 months ago
2
Diagnosis table documentation -- add links
#31
pnrobinson
opened
1 year ago
0
Mapping stages from disease table in CDA
#30
pnrobinson
opened
1 year ago
1
Develop
#29
pnrobinson
closed
1 year ago
0
Questions regarding variants
#28
msierk
opened
1 year ago
0
Better cache filename
#27
justaddcoffee
closed
1 year ago
0
Fix duplicated disease entries
#26
justaddcoffee
closed
1 year ago
0
adding more tsv diagnosis codes for cervical cancer
#25
pnrobinson
closed
1 year ago
0
Op diagnosis mapper test
#24
pnrobinson
closed
1 year ago
0
Fix ingest for lung
#23
justaddcoffee
closed
1 year ago
0
CI pytest failing to find input file
#22
pnrobinson
closed
1 year ago
1
Develop
#21
pnrobinson
closed
1 year ago
0
backmerge
#20
pnrobinson
closed
1 year ago
0
Update imports and structure
#19
ielis
closed
1 year ago
0
adding treatment mappings
#18
madanucd
closed
1 year ago
0
Code to create Phenopacket Biosamples
#17
sujaypatil96
closed
1 year ago
0
Add support for mutation table
#16
justaddcoffee
closed
1 year ago
0
Develop
#15
pnrobinson
closed
1 year ago
0
Disease
#14
pnrobinson
closed
1 year ago
0
adding convenience fxn
#13
pnrobinson
closed
1 year ago
0
Individual doc
#12
pnrobinson
closed
1 year ago
0
adding neoplasms types file
#11
pnrobinson
closed
1 year ago
0
fix tests in `tests/test_op_individual.py`
#10
sujaypatil96
closed
1 year ago
0
Specify the versions
#9
ielis
closed
1 year ago
0
Change from `c2p` and `oncopacket` to `oncoexporter`.
#8
ielis
closed
1 year ago
0
Rename to_ga4gh() -> to_phenopacket()? Just a thought
#7
justaddcoffee
closed
1 year ago
0
Minor renaming stuff - c2p -> oncopacket
#6
justaddcoffee
closed
1 year ago
0
Fix testtest_alive_vital_status and fix pytest execution on github
#5
justaddcoffee
closed
1 year ago
0
Setup docs
#4
ielis
closed
1 year ago
0
VitalStatus
#3
pnrobinson
closed
1 year ago
1
API docs not working
#2
pnrobinson
closed
1 year ago
4
moving to pyproject.toml
#1
pnrobinson
closed
1 year ago
2
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