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monarch-initiative
/
pheval
A framework for empirical evaluation of phenotype matching and prioritisation
https://monarch-initiative.github.io/pheval/
Apache License 2.0
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create plugins.md
#308
yaseminbridges
closed
5 months ago
0
Add handling of chromosome naming in the phenopacket
#307
yaseminbridges
closed
5 months ago
4
Implemented PhEval runners
#306
yaseminbridges
closed
5 months ago
3
304 change matching of result files to phenopacket in benchmarking
#305
yaseminbridges
closed
5 months ago
0
Change matching of result files to phenopacket in benchmarking
#304
yaseminbridges
closed
5 months ago
0
302 add roc curves and precision recall curves to benchmarking output
#303
yaseminbridges
closed
5 months ago
0
Add ROC curves and Precision-Recall curves to benchmarking output
#302
yaseminbridges
closed
5 months ago
0
300 change rank decrease to rank change in rank comparison summary
#301
yaseminbridges
closed
5 months ago
1
Change rank decrease to rank change in rank comparison summary
#300
yaseminbridges
closed
5 months ago
0
adding missing argument for writing binary classification stats
#299
yaseminbridges
closed
7 months ago
0
Add missing binary classification stats object for writing stats
#298
yaseminbridges
closed
7 months ago
0
Move legend in stats plot generation
#297
yaseminbridges
closed
7 months ago
1
Implement a PhEval Utils method for SEMSIM to SQL conversion
#296
souzadevinicius
opened
7 months ago
0
Change legend position in plots
#295
yaseminbridges
closed
7 months ago
0
check for no parent in `convert_patient_terms_to_parent`
#294
yaseminbridges
closed
7 months ago
0
Check for no parent when scrambling phenotypic profiles
#293
yaseminbridges
closed
7 months ago
0
Removing H2 jar as internal dependency. Fixes #291
#292
souzadevinicius
opened
7 months ago
2
Remove H2 jar as an internal dependency
#291
souzadevinicius
closed
7 months ago
0
Fixing param name in semsim-to-exomiserdb utils cli command
#290
souzadevinicius
closed
7 months ago
0
Fixing param name in semsim-to-exomiserdb utils cli command
#289
souzadevinicius
closed
7 months ago
0
Fixing param name in semsim-to-exomiserdb utils cli command
#288
souzadevinicius
closed
7 months ago
0
286 implement the binary classification statistics
#287
yaseminbridges
closed
7 months ago
0
Implement the binary classification statistics
#286
yaseminbridges
closed
7 months ago
0
281 implement the functionality to record binary classification categories
#285
yaseminbridges
closed
7 months ago
0
Fixing exomiserdb.infra import
#284
souzadevinicius
closed
7 months ago
0
Fixing exomiserdb.infra import
#283
souzadevinicius
closed
7 months ago
0
Implementing pheval.template as end2end workflow test
#282
souzadevinicius
closed
3 months ago
1
Implement the functionality to record binary classification categories
#281
yaseminbridges
closed
7 months ago
0
279 calculate ndcg@k
#280
yaseminbridges
closed
7 months ago
0
Calculate NDCG@k
#279
yaseminbridges
closed
7 months ago
0
277 calculate f score@k
#278
yaseminbridges
closed
7 months ago
2
Calculate F-score@k
#277
yaseminbridges
closed
7 months ago
0
275 calculate MAP@k
#276
yaseminbridges
closed
7 months ago
0
Calculate MAP@k
#275
yaseminbridges
closed
7 months ago
0
273 calculate precision@k
#274
yaseminbridges
closed
7 months ago
0
Calculate precision@k
#273
yaseminbridges
closed
7 months ago
0
Implement additional benchmarking statistics
#272
yaseminbridges
closed
7 months ago
0
Handle empty results
#271
yaseminbridges
closed
7 months ago
0
Doc page: How to create a new PhEval release
#270
souzadevinicius
opened
8 months ago
0
custom runner cannot be tested with the current documentation setup
#269
iQuxLE
closed
3 months ago
4
Updating docs for developing a pheval plugin with notes about `cruft` installation
#268
yaseminbridges
closed
8 months ago
0
Update PhEval dependency installation instruction
#267
yaseminbridges
closed
7 months ago
1
change version in 'poetry add pheval' so Pheval contains PhevalDiseaseResult
#266
iQuxLE
closed
7 months ago
3
Sphintoxetry-cookiecutter template does not process project_name variable correctly
#265
iQuxLE
closed
8 months ago
2
263 prettify pheval plots
#264
yaseminbridges
closed
8 months ago
0
"Prettify" PhEval plots
#263
yaseminbridges
closed
8 months ago
0
Merge docs into main
#262
yaseminbridges
closed
8 months ago
1
updating the link to the cookie cutter template
#261
yaseminbridges
closed
9 months ago
0
update the cookie cutter template link in the docs
#260
yaseminbridges
closed
9 months ago
0
Update the docs branch with main
#259
yaseminbridges
closed
9 months ago
0
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