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mpievolbio-scicomp
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rarefan
http://rarefan.evolbio.mpg.de
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When downloading data, I get a warning that it is not safe to download.
#64
fredeBio
opened
10 months ago
1
The test data sets on the website are deleted.
#63
fredeBio
closed
1 year ago
2
Fix gff3 exporter
#62
CFGrote
closed
1 year ago
3
Add links to updated reference data runs (issue #59).
#61
CFGrote
closed
1 year ago
0
Fix REPIN-RAYT distance default value
#60
CFGrote
closed
1 year ago
0
Updating example data
#59
fredeBio
closed
1 year ago
6
Issue54 paper reference
#58
CFGrote
closed
1 year ago
0
GFF3 support
#56
CFGrote
closed
1 year ago
3
Added gff functionality
#55
fredeBio
closed
1 year ago
1
Add citation to our rarefan paper to the rarefan website.
#54
fredeBio
closed
1 year ago
1
run 3_ct28lo
#53
CFGrote
opened
1 year ago
0
Set default distance_repin_rayt to 130
#52
CFGrote
closed
1 year ago
0
Fix DNA validation (#50)
#51
CFGrote
closed
1 year ago
0
Accept non ACGT characters in sequence uploads
#50
CFGrote
closed
1 year ago
2
Fix sorting if many REP/REPIN groups are found.
#49
CFGrote
closed
1 year ago
0
Report table if Analyse REPINs is off.
#48
CFGrote
closed
1 year ago
5
Fix behaviour if non-DNA sequences are submitted.
#47
CFGrote
closed
1 year ago
0
Check submitted data
#46
CFGrote
closed
1 year ago
7
Tree generation failed
#45
fredeBio
opened
1 year ago
2
Fixing status logging and refresh logic
#44
CFGrote
closed
1 year ago
0
Update report template (solves issue #42)
#43
CFGrote
closed
1 year ago
0
REP singlets name needs to change
#42
fredeBio
closed
1 year ago
5
Frederic
#41
CFGrote
closed
1 year ago
0
Cannot download data anymore
#40
fredeBio
closed
1 year ago
2
Adding files readme to outdir
#39
CFGrote
closed
2 years ago
0
Add README to out/ directory
#38
CFGrote
closed
2 years ago
3
Silence mcl output.
#37
CFGrote
closed
2 years ago
0
Silence MCL output.
#36
CFGrote
closed
2 years ago
0
Silence MCL output.
#35
CFGrote
closed
2 years ago
0
Third party tools RAREFAN website
#34
fredeBio
closed
2 years ago
1
Develop
#33
CFGrote
closed
2 years ago
0
issue #26
#32
CFGrote
closed
2 years ago
0
404 error file missing for Stenotrophomonas maltophilia Sm53 dataset on Rarefan website
#31
fredeBio
closed
2 years ago
3
Reporting REP/REPIN counts in a table
#30
CFGrote
closed
2 years ago
1
replace none with no
#29
fredeBio
closed
2 years ago
3
Add repin-rayt-distance parameter to CL and Web Interface
#28
CFGrote
closed
2 years ago
0
RAYTs are not linked/displayed in the Kingella test set: REPIN/RAYT distance parameter needs adding and changing to 200bp.
#27
fredeBio
closed
2 years ago
1
Page not found error
#26
fredeBio
closed
2 years ago
1
Plot message needs changing
#25
fredeBio
closed
2 years ago
2
MCL output
#24
fredeBio
closed
2 years ago
6
Filter RAREFAN logfile
#23
fredeBio
closed
2 years ago
1
REP/REPIN table
#22
fredeBio
closed
2 years ago
6
Discuss why presAbs_?.txt and maxREPIN_?.txt are sometimes empty
#21
CFGrote
closed
2 years ago
4
New parameter REPIN-RAYT distance
#20
CFGrote
closed
2 years ago
1
update fixes
#19
CFGrote
closed
2 years ago
1
Empty presAbs_?.txt, maxREPIN_?.txt
#18
CFGrote
closed
2 years ago
2
Issue #16 reporting
#17
CFGrote
closed
2 years ago
0
Improve reporting and error/warning messages
#16
CFGrote
closed
2 years ago
9
Develop
#15
CFGrote
closed
2 years ago
0
Issue #12
#14
CFGrote
closed
2 years ago
1
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