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mrvollger
/
StainedGlass
Make colorful identity heatmaps of genomic sequence
https://mrvollger.github.io/StainedGlass/
MIT License
98
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10
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samtools sort: failed to read header from "-"
#48
pkerpedjiev
closed
2 weeks ago
11
How to adjust the color scale manually?
#47
yuanhao0626
opened
3 months ago
0
cooler error
#46
Gon1976
closed
3 months ago
1
numpy.linalg import error when running cooler_density + temporary fix
#45
laramiemckenna
closed
3 months ago
3
Apple M2 installation problems
#44
hendersi
closed
4 months ago
3
Alignment Mode and Parameter Adjustment in StainedGlass
#43
justdx
opened
4 months ago
0
subprocess.CalledProcessError: Command 'conda info --json' returned non-zero exit status 127.
#42
danli349
opened
5 months ago
0
IndentationError in file D:\R\plots\StainedGlass\workflow\Snakefile, line 51:
#41
danli349
opened
5 months ago
0
Add parallelization to two samtools calls
#40
eernst
closed
5 months ago
1
cool file
#39
molecule53
closed
6 months ago
2
Diagonal Comparison Score
#38
Ne0tea
opened
6 months ago
1
samtools sort: truncated file. Aborting
#37
molecule53
closed
6 months ago
4
Need to update to snakemake v8
#36
mrvollger
closed
6 months ago
0
heatmap figure
#35
shehongbing
closed
4 months ago
1
NameError: name 'srcdir' is not defined
#34
molecule53
closed
6 months ago
8
name 'srcdir' is not defined
#33
shehongbing
closed
7 months ago
0
Errors
#32
diego-rt
opened
8 months ago
0
solutions for larger chromosomes?
#31
laramiemckenna
closed
4 months ago
1
samtools sort: failed to change sort order header to 'SO:coordinate'
#30
yeeus
closed
12 months ago
2
running error when changed the window size
#29
HippoYI
opened
1 year ago
0
running error
#28
Galaxy-228
closed
1 year ago
2
Running error
#27
jiadong324
closed
1 year ago
5
pandas<2 needed to handle cooler issue
#26
amakunin
closed
1 year ago
3
container availablity?
#25
aseetharam
closed
1 year ago
2
Could not solve for environment specs The following package could not be installed └─ snakemake >=7.8 is uninstallable because it requires └─ dropbox >=7.2.1 , which conflicts with any installable versions previously reported.
#24
xfcypeng
closed
1 year ago
1
Clarification for the `mm_f` config parameter
#23
taprs
closed
1 year ago
2
No .bed files created
#22
Evansd36
closed
1 year ago
2
How to adjust the color deeper
#21
zhoudreames
closed
1 year ago
0
Install
#20
shdonghzau
closed
1 year ago
3
issues with env.yaml - dropbox dependency
#19
laramiemckenna
closed
1 year ago
3
[ERROR] unknown option in "-w11"
#18
wushyer
closed
1 year ago
1
install env.yaml and R.yaml once
#17
zy041225
closed
1 year ago
2
higlass
#16
duhuipeng
closed
1 year ago
0
StainedGlass: Error in rule make_R_figures
#15
zeyak
closed
2 years ago
2
higlass-manage error: mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64e'))
#14
zeyak
closed
2 years ago
6
snakemake : Downloading and installing remote packages.
#13
JiaoLaboratory
closed
2 years ago
2
StainedGlass
#12
duhuipeng
closed
2 years ago
6
Fuzzy heatmap
#11
tiramisutes
closed
2 years ago
2
Hello! I am trying to run the workflow. I must said I am not used to work within python envs. I have tried running snakemake from different sources but none is working. Maybe you could understand what is happening: Thank you in advance!
#10
somnya
closed
2 years ago
2
heatmap
#9
duhuipeng
closed
2 years ago
3
Trouble generating figures
#8
pilleh
closed
2 years ago
4
python environment
#7
duhuipeng
closed
2 years ago
1
Syntax error in Snakefile
#6
pilleh
closed
2 years ago
5
Cooler density
#5
pkerpedjiev
closed
3 years ago
1
Added a note about how to view with higlass
#4
pkerpedjiev
closed
3 years ago
0
Create LICENSE
#3
mrvollger
closed
3 years ago
0
draw plot
#2
zhoudreames
closed
3 years ago
2
Add commands for generating a cooler file
#1
pkerpedjiev
closed
3 years ago
0