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AMR
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
https://msberends.github.io/AMR/
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Update of candida taxonomy
#45
jukkiebah
closed
1 year ago
5
Wrong MIC interpretation of carbapenems in *Morganella morganii*
#44
msberends
closed
3 years ago
2
Mislabelled ATC code
#41
rmartischang
closed
3 years ago
2
Custom_eucast_rules() and the use of antibiotic==NA before the tilde
#40
mvrcwest
closed
3 years ago
3
convert to amr 1.6.0
#39
jukkiebah
closed
3 years ago
3
Support for CLSI 2020 and 2021
#38
msberends
closed
3 years ago
3
Package removed from CRAN?
#35
drpturner
closed
3 years ago
9
`custom_eucast_rules()` does not allow printing `NA` after tilde
#34
mvrcwest
closed
3 years ago
5
Cannot specify column for species designation in mdro()
#33
jhawkey
closed
3 years ago
4
Error in getting mo properties from old MO codes
#32
msberends
closed
3 years ago
2
Custom AMR rules to expand EUCAST rules
#31
msberends
closed
3 years ago
5
Source for SNOMED is not universal/international
#30
msberends
closed
3 years ago
2
antibiotics dataset (ceftazidime/avibactam)
#29
peterdutey
closed
3 years ago
4
ampc cefalosporin resistance
#28
jukkiebah
closed
3 years ago
9
first isolates function does not take untested isolates into account
#27
jukkiebah
closed
3 years ago
5
Remove "pillar_shaft_simple" compatibility code
#26
krlmlr
closed
3 years ago
1
refinement of eucast-ampc rules
#25
jukkiebah
closed
3 years ago
2
Custom MDRO guidelines
#23
msberends
closed
3 years ago
3
Attributes lost after exporting/importing data sets?
#22
jukkiebah
closed
3 years ago
3
strange results for P. aer when using BRMO-guideline within MDRO()
#21
jukkiebah
closed
3 years ago
7
issue with as.ab (amr 1.5)
#20
jukkiebah
closed
3 years ago
5
Detection of ampC in eucast_rules()
#19
msberends
closed
3 years ago
1
Custom guideline for as.rsi()
#17
yomac98
closed
3 years ago
7
eucast_rules() throws an error
#16
nrkoehler
closed
3 years ago
8
Incorrect reporting of R e.g CIP and Enterobacterales?
#15
antunderwood
closed
3 years ago
8
Re: AMR library problem.
#13
fire-bot
closed
4 years ago
1
Finish adding @fire-bot to your repo
#12
fire-bot
closed
4 years ago
0
Using at.rsi with dplyr's mutate and across
#11
antunderwood
closed
4 years ago
8
iv_ddd missing for PEN in antibiotics
#9
ceefluz
closed
4 years ago
1
small error in ab_property docs
#8
ceefluz
closed
4 years ago
1
MIC value without leading zero
#7
msberends
closed
4 years ago
2
WHONET interpretations when MIC is >
#6
antunderwood
closed
4 years ago
10
Interpreting CLSI values (blood)
#5
antunderwood
closed
4 years ago
12
Adding option to ggplot_pca for angle of vector labels
#4
a2freema
closed
4 years ago
3
AMR fails on drug names ending with "-p"
#3
msberends
closed
4 years ago
2
Implement MDR rules by Magiorakos et al. (2012)
#2
msberends
closed
4 years ago
1
Issue with Eucast Expert Rules (Stenotrophomonas maltophilia and CAZ)
#1
remi-leguern
closed
4 years ago
3
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