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AMR
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
https://msberends.github.io/AMR/
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NA converted to first defined custom micro-organism
#107
bennsal
closed
1 year ago
5
Breakpoints prefer PK/PD
#106
msberends
closed
1 year ago
0
Clinical breakpoints for *Burkholderia mallei* and *Burkholderia pseudomallei* for all antibiotic might be wrong
#105
msberends
closed
1 year ago
2
Possibility of adding EUCAST ECOFF values
#102
hkaspersen
closed
1 year ago
9
as.sir function not found
#101
arsp-dev
closed
1 year ago
2
help with %like%
#100
iDudeRPS
closed
1 year ago
3
strange results, when using first isolate()
#99
jukkiebah
closed
1 year ago
3
antibiogram
#97
msberends
closed
1 year ago
0
set body site for SIR intepretation
#96
theanita1
closed
1 year ago
6
g.test doesn't handle zero counts
#95
jtufto
closed
1 year ago
4
EUCAST rules where there shouldn't be interpretations
#94
theanita1
closed
1 year ago
3
Replace RSI with SIR everywhere
#93
msberends
closed
1 year ago
0
Add `mo_pathogenicity()`
#92
msberends
closed
1 year ago
1
Add Bartlett et al. (2022) for human pathogenicity?
#90
msberends
closed
1 year ago
1
Antibiotic resistance prediction challenge 1
#85
sengeruan
closed
1 year ago
2
Incorporate new GBIF backbone
#84
msberends
closed
1 year ago
1
Gram stain does not recognise Actinomycetota
#83
msberends
closed
1 year ago
0
mdro function giving error for Table 5 Acinetobacter
#78
theanita1
closed
1 year ago
6
Implement extensive antiviral agents support
#77
msberends
closed
1 year ago
0
No support for coercing antivirals
#76
msberends
closed
1 year ago
1
Getting Error: RStudio not running after `mo_uncertainties()`
#74
msberends
closed
1 year ago
1
Candida auris mapped to only Candida by as.mo()
#73
remcv
closed
1 year ago
6
Unit test fix
#72
msberends
closed
1 year ago
0
Prepare 2.0
#71
msberends
closed
1 year ago
0
Add confidence intervals for AMR calculation
#70
msberends
closed
1 year ago
2
Report ATU of EUCAST guidelines
#69
msberends
closed
1 year ago
1
New tibble
#68
msberends
closed
2 years ago
0
Add Ukrainian translation
#67
gxpcluster
closed
2 years ago
1
Azithromycin vs Salmonella spp.
#66
send2dan
closed
1 year ago
6
Implement new mo algorithm
#65
msberends
closed
1 year ago
1
Add Ukrainian translation
#64
msberends
closed
2 years ago
7
Checklist for v2.0.0
#63
msberends
closed
1 year ago
0
Implement EUCAST System for Antimicrobial Abbreviations
#62
msberends
closed
1 year ago
2
Only mention determination of mo column once in dplyr groups
#61
msberends
closed
1 year ago
1
Clean up `mo_is_yeast()`
#60
msberends
closed
2 years ago
1
Regard `""` as `NA` in `as.disk()`
#59
msberends
closed
2 years ago
1
New MICs to support
#58
msberends
closed
1 year ago
1
Prevent unknown ATC codes from getting coerced
#57
msberends
closed
2 years ago
0
Set up GitHub Actions for website generation
#56
msberends
closed
2 years ago
0
Drug mapping for co-fluampicil
#55
peterdutey
closed
1 year ago
8
mo_fullname("P. aeroginosa") does not return mo with highest matching score
#54
vrognas
closed
1 year ago
5
Error in seq_len
#53
susheelbhanu
closed
2 years ago
6
RSI values by lab system MIPS
#52
msberends
closed
2 years ago
0
Add Trypanosomatidae (parasitic agents)
#51
msberends
closed
1 year ago
3
brmo() fills every row
#49
jukkiebah
closed
2 years ago
6
Support for ‘high dose/dosage’ in `as.rsi()`
#48
msberends
closed
2 years ago
1
Veillonella
#47
jukkiebah
closed
3 years ago
1
ab_ddd() returns NA for several ATCs
#46
remcv
closed
3 years ago
11
Update of candida taxonomy
#45
jukkiebah
closed
1 year ago
5
Wrong MIC interpretation of carbapenems in *Morganella morganii*
#44
msberends
closed
3 years ago
2
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