nanoporetech ont-assembly-polish issues

nanoporetech / ont-assembly-polish

ONT assembly and Illumina polishing pipeline

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Using pipeline for polishing of ONT transcriptomic data (from cDNA sequencing) with short Illumina reads

#27 MartinTes closed 3 years ago
2
Unable to find image 'ont-assembly-polish:latest' locally

#26 okazakib closed 3 years ago
1
Execution with conda

#25 SuseAgu closed 4 years ago
0
request for test data and results

#24 GodloveD closed 4 years ago
3
big genome ?

#23 colindaven closed 4 years ago
2
Feature Request: Conda installation

#22 jolespin closed 5 years ago
1
update in analysis.mk

#21 fabiodepa closed 5 years ago
9
[ERROR] /bin/sh: 1: cmake: not found

#20 fabiodepa closed 5 years ago
1
[ERROR] failed to open file './assembly-polish/canu-assembly/canu.contigs.fasta' make: *** [assembly-polish/racon.contigs.fasta] Error 1

#19 pneumowidow closed 5 years ago
4
*** No rule to make target 'modules'. Stop.

#18 TseWue closed 5 years ago
3
racon output

#17 fanhuan closed 5 years ago
1
Run without docker

#16 BertBog closed 5 years ago
1
Need to externalize config.mk outside the container

#15 rusalkaguy closed 5 years ago
2
Shotgun library

#14 lalalagartija closed 6 years ago
0
Shotgun library

#13 lalalagartija closed 6 years ago
0
interested by the commands used to evaluate accuracy

#12 splaisan closed 6 years ago
1
Difficulty building from Docker

#11 jussher closed 6 years ago
13
canu error: Can't locate canu/Defaults.pm

#10 mortunco closed 6 years ago
1
Applying this on Pacbio sequencing methodology ?

#9 mortunco closed 6 years ago
1
Samtools sort -o flag missing

#8 eyalbenda closed 6 years ago
1
make: *** [build] Error 128, fatal: unable to access 'https://git.oxfordnanolabs.local/bsipos/ont-assembly-polish.git/': Could not resolve host: git.oxfordnanolabs.local

#7 johnsolk closed 7 years ago
2
settings for multiple rounds of CANU error correction

#6 michieitel closed 7 years ago
1
docker image fails with git clone of ont-assembly-polish

#5 biobenkj closed 7 years ago
1
Can only run one instance of the pipeline at a time

#4 ericenns closed 7 years ago
1
samtools problem

#3 gaworj closed 7 years ago
1
samtools sort

#2 tomsauv closed 7 years ago
2
time saving

#1 wzylin closed 7 years ago
1