issues
search
naobservatory
/
p2ra
4
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Remove estimates for Dengue and West Nile
#141
jeffkaufman
closed
1 year ago
0
Simon norovirus | added comment
#140
simonleandergrimm
closed
1 year ago
0
Make it easier to see what taxids estimates apply to
#139
jeffkaufman
closed
1 year ago
1
Simon hpv
#138
simonleandergrimm
closed
1 year ago
0
Add HPV estimates
#137
simonleandergrimm
closed
1 year ago
1
Match all target MGS samples with public health data
#136
jeffkaufman
closed
1 year ago
0
Fix "Montogmery County" typo
#135
dp-rice
closed
1 year ago
1
Bump mgs data tag to fix "Montogmery County"
#134
dp-rice
closed
1 year ago
0
Add check-matches.py
#133
jeffkaufman
closed
1 year ago
5
Investigate why HIV LA County 2020 is not matching
#132
dp-rice
closed
1 year ago
1
Fixed variable name of public_health_lab_infections, as mentioned in #128
#131
simonleandergrimm
closed
1 year ago
0
Currently it is unclear when the NORS Outbreak data starts, only that it ends in 2021.
#130
simonleandergrimm
closed
1 year ago
2
Potentially incorporate the share of positive tests into our influenza underreporting factor. (flag with Dan)
#129
simonleandergrimm
closed
1 year ago
2
Minor fix in influenza.py: Changing the variable name `public_health_labs_infections` to `clinical_labs_infections`
#128
simonleandergrimm
closed
1 year ago
3
Identify COVID-19 underreporting factor for the Omicron surge
#127
simonleandergrimm
closed
1 year ago
5
Simon CMV (supersedes #48)
#126
simonleandergrimm
closed
1 year ago
0
Compare prevalence/incidence estimates with MGS data
#125
dp-rice
closed
1 year ago
1
Simon rhinovirus (supersedes #66)
#124
simonleandergrimm
closed
1 year ago
0
Simon EBV (supersedes #49)
#123
simonleandergrimm
closed
1 year ago
0
Simon HBV (supersedes #102)
#122
simonleandergrimm
closed
1 year ago
0
Simon HAV (supersedes #109)
#121
simonleandergrimm
closed
1 year ago
5
Apply model to Spurbeck MGS data
#120
dp-rice
closed
1 year ago
1
Add more tests for stats.py
#119
dp-rice
closed
1 year ago
0
Normalize model quantities
#118
dp-rice
closed
1 year ago
0
Fit Crits-Christoph MGS data
#117
dp-rice
closed
1 year ago
0
Stats: Adjust priors to improve posterior checks
#116
dp-rice
closed
1 year ago
1
Apply model to more viruses
#115
dp-rice
closed
1 year ago
0
Apply model to a second MGS dataset
#114
dp-rice
closed
1 year ago
0
Changed HAV underreporting scalar and removed unnecessary incidence variables.
#113
simonleandergrimm
closed
1 year ago
0
Fit covid and norovirus to Rothman MGS
#112
dp-rice
closed
1 year ago
3
Consider usefulness of county-level HCV estimates (that were created) and county-level HBV estimates (that weren't yet created)
#111
simonleandergrimm
closed
1 year ago
1
Reassess HCV and HBV data.
#110
simonleandergrimm
closed
1 year ago
1
Asher hav
#109
asherps
closed
1 year ago
2
Stop converting incidences to prevalences
#108
jeffkaufman
closed
1 year ago
0
Bump MGS tag to use state data
#107
dp-rice
closed
1 year ago
0
Stats: run model for more viruses
#106
dp-rice
closed
1 year ago
0
Use country and state metadata from MGS repo
#105
dp-rice
closed
1 year ago
1
location: work like date
#104
jeffkaufman
closed
1 year ago
0
Add get_location that works like get_dates
#103
jeffkaufman
closed
1 year ago
0
Asher hbv
#102
asherps
closed
1 year ago
1
Add location_source
#101
jeffkaufman
closed
1 year ago
3
Posterior predictive sampling
#100
dp-rice
closed
1 year ago
0
Clean up location comparison
#99
dp-rice
closed
1 year ago
1
incidence to prevalence: consider incidence over time
#98
jeffkaufman
closed
1 year ago
1
Add date_source
#97
jeffkaufman
closed
1 year ago
0
target: remove some cases in which you need to `target()`
#96
jeffkaufman
closed
1 year ago
2
summarize: don't skip location and date information from the top-level
#95
jeffkaufman
closed
1 year ago
0
Asher ebv denmark
#94
asherps
closed
1 year ago
4
Remove the need for tag= in most cases
#93
jeffkaufman
closed
1 year ago
0
Populations: import all county-level populations from census
#92
jeffkaufman
closed
1 year ago
0
Previous
Next