nboley idr issues - Githubissues

nboley / idr

IDR

GNU General Public License v2.0

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IDR cannot be launched after install

#68 callum-b opened 2 months ago
0
idr/archive/2.0.2.zip not in accordance with the master branch

#67 axol0tl opened 4 months ago
0
idr hangs?

#66 hepcat72 closed 1 year ago
1
--input-file-type bed expecting 9 columns

#65 perinom opened 1 year ago
1
AttributeError: module 'numpy' has no attribute 'int'

#64 narzouni opened 1 year ago
2
Irreproducible Discovery Rate (IDR) for 3 replicates

#63 lipc20052006 opened 1 year ago
3
idr:idr has no attribute 'fit_model_and_calc_local_idr'

#62 SomaG-PSN opened 2 years ago
0
IDR-pooled peak list

#61 Erfan1369 opened 2 years ago
0
installation issues

#60 eeamiri closed 2 years ago
0
Parameter requirements for input file in BED format?

#59 ydy1127 opened 2 years ago
0
pkg_resources.DistributionNotFound

#58 Li-ZhiD opened 3 years ago
0
error: Use a.any() or a.all()_

#57 LunaPatton closed 2 years ago
3
idr --samples peak1 peak2 : Number of peaks passing IDR cutoff of 0.05 - 0/50537 (0.0%)

#56 AndHerr opened 3 years ago
1
idr excludes top peaks

#55 natashaklmnk opened 3 years ago
1
ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()

#54 hcph opened 3 years ago
5
Error running with bed file

#53 celinasjose opened 3 years ago
0
IDR with small number of peaks

#52 peaceben opened 3 years ago
0
Can I use IDR to analyze ChIPseq or Cuttag data of histones?

#51 AIBio opened 4 years ago
0
what the columns when the inputs are bed files?

#50 olechnwin opened 4 years ago
1
bug found?

#49 olechnwin opened 4 years ago
1
ValueError: could not convert string to float

#48 IzabelaIbraim opened 4 years ago
0
Order of Peak1 vs. Peak2 after --samples

#47 singing-scientist opened 4 years ago
1
Empty merged picks list

#46 amitjavilaventura opened 4 years ago
2
Version mismatch between code and documentation (README.md)

#45 balwierz opened 5 years ago
0
Fails with ValueError on narrow peaks

#44 balwierz closed 5 years ago
1
score does not correspond with IDR

#43 mistrm82 opened 5 years ago
1
Fold enrichment value when running IDR with pvalue rank

#42 msantorsola opened 5 years ago
0
IndexError: list index out of range

#41 aparnasing opened 5 years ago
7
Increasing number of significant figures in old output format for easier ranking

#40 rhysnewell closed 6 years ago
0
idr error with narrowPeaks

#39 wisense opened 6 years ago
2
An error when call idr in command line

#38 wisense opened 6 years ago
0
idr for more than two samples

#37 taloron opened 6 years ago
5
--use-nonoverlapping-peaks argument never used

#36 haoyangz opened 6 years ago
1
Cannot run IDR with more than 2 replicates

#35 thek71 opened 7 years ago
9
ValueError when running test peak files

#34 doliv071 closed 4 years ago
5
Remove rounding of IDR output values to 2.d.p. to enable correct filtering from soft-threshold IDR output file

#33 Charlie-George closed 7 years ago
0
How uninstall on a MAC

#32 benflynn opened 7 years ago
0
No module named 'idr.idr'

#31 benflynn closed 7 years ago
0
IDR on gappedPeak format file

#30 jma1991 opened 7 years ago
0
Installation on Windows 7

#29 ajeetmandal opened 7 years ago
0
fix bug (when summit in merged peaks is None)

#28 leepc12 opened 7 years ago
4
TypeError: unorderable types: NoneType() < int()

#27 shawnzhangyx opened 7 years ago
2
Issue with Clip-seq data

#26 BennyStrobes opened 7 years ago
1
installation error IDR

#25 catch-minie opened 7 years ago
1
Weird-looking plots

#24 DarwinAwardWinner closed 7 years ago
5
added validation code for narrowPeak, broadPeak files

#23 lzamparo opened 8 years ago
0
--rank option with arg 'p.value' raises a Value Error

#22 lzamparo closed 8 years ago
1
--use-best-multisummit-IDR not recognized in idr-2.0.2

#21 ghost opened 8 years ago
2
Add both IDR plots

#20 nboley closed 8 years ago
0
Motivation for parameter clipping

#19 superbobry closed 8 years ago
1