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ncbi
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pgap
NCBI Prokaryotic Genome Annotation Pipeline
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Annotation fails
#225
talberf
closed
1 year ago
1
[BUG] Unclear error messages
#224
MrTomRod
closed
2 years ago
6
Question: PGAP works with FASTAS that have more than a one contig?
#223
JuanAranguiz
closed
2 years ago
1
PGAP failed, docker exited with rc = 1
#222
JuanAranguiz
closed
2 years ago
8
PGAP failed, docker exited with rc = 1
#221
Ahmer1122
closed
2 years ago
3
installation of some or all of components failed.
#220
Ahmer1122
closed
2 years ago
3
[BUG] urlopen error
#219
srsfishbein
closed
2 years ago
1
run without internet access
#218
OH-AU
closed
1 year ago
16
invalid syntax
#217
tbazilegith
closed
2 years ago
18
run error when it runs with apptainer (HPC)
#216
Norina28
closed
2 years ago
14
ERROR running test genome after successful installation
#215
koper86
closed
1 year ago
1
WARNING Final process status is permanentFail
#214
tbazilegith
closed
2 years ago
16
[BUG] <title> HTTP Error 403: rate limit exceeded
#213
Gahyeon-K
closed
2 years ago
8
Failure due to species name ?
#212
ap1438
closed
2 years ago
2
[BUG] <PGAP failed, docker exited with rc = 1>
#211
Kartikj112
closed
2 years ago
4
Test data works correctly, but Personal data not functioning properly
#210
ghost
closed
2 years ago
7
[BUG] <title>
#209
VanesaFP
closed
2 years ago
1
Running PGAP without the wrapper script
#208
npcooley
closed
2 years ago
1
[BUG] Modify cpus parameter: very low value (8), no parameter. Running PGAP still not working
#207
wanjinhu
closed
2 years ago
10
Difficulty running PGAP with singularity
#206
stitam
closed
2 years ago
5
[BUG] "WARNING Final process status is permanentFail" with pgap-2022-04-14.build6021
#205
wanjinhu
closed
2 years ago
4
[BUG] <PGAP Fail on AWS Batch>
#204
kpenn88
closed
2 years ago
31
[BUG] March 30th update broke our ability to run on Windows
#203
bstew3
closed
2 years ago
6
Error during annotation - taskset: failed to set pid 0's affinity: Invalid argument
#202
matnguyen
closed
2 years ago
20
PGAP failed, docker exited with rc = 1
#201
abdziz
closed
2 years ago
2
Completed permanentFail when using test_genomes/C_jejuni/input.yaml
#200
zhuofeih
closed
2 years ago
2
Failure to complete annotation
#199
bharat1912
closed
2 years ago
1
Issue with installation
#198
awalling
closed
2 years ago
5
Failed PGAP & Memory Issues
#197
MacsPack
closed
2 years ago
3
Unable to complete annotation
#196
AerdnaIttualoc
closed
2 years ago
8
Getting buildxxxx.ani for taxcheck
#195
nclaesnacw
closed
2 years ago
2
Issues with --taxcheck
#194
rjg2186
closed
2 years ago
10
error when trying to install pgap.
#193
jh288
closed
2 years ago
7
[BUG] schema_salad.exceptions.ValidationException: [Errno 13] Permission denied: '/pgap/user_input/pgap_input.yaml'
#192
MDSharma
closed
2 years ago
5
[BUG] Permission denied in installation
#191
ssqd2022
closed
2 years ago
7
[BUG] PGAP failed, docker exited with rc = 1 WARNING Final process status is permanentFail
#190
devikarajk
closed
2 years ago
1
[BUG] <title>A warning Warning: Field `location` contains undefined reference to `file:///pgap/pgap/input`, then after run 15 min, it reports permanent FAIL!
#189
minhtrung1997
closed
2 years ago
4
[BUG] WARNING Final process status is permanentFail
#188
dgutierrezcastillo
closed
2 years ago
12
[BUG] <WARNING Final process status is permanentFail>
#187
arkruem
closed
2 years ago
7
Final process status is permanentFail
#186
Nirmal2310
closed
2 years ago
1
WARNING Final process status is permanentFail
#185
dgutierrezcastillo
closed
2 years ago
1
Unable to read test genome in input.yml file: undefined reference.
#184
emilyjunkins
closed
2 years ago
12
[BUG] Problem with Ani-taxcheck. Warning Final process status is permanentFail.
#183
MicoNick
closed
2 years ago
14
[FEATURE REQUEST] PGAP - ANI taxonomic module
#182
JayanthiGangiredla
closed
2 years ago
2
[job pgapx_yaml_ctl] completed permanentFail
#181
utpalh
closed
2 years ago
1
work disk space (GiB) is less than the recommended value of 80
#180
utpalh
closed
2 years ago
2
[BUG] WARNING [job fastaval] completed permanentFail
#179
scrosson73
closed
2 years ago
7
[FEATURE REQUEST] <title>
#178
kpenn88
closed
2 years ago
2
Final process status is permanentFail
#177
marieleoz
closed
2 years ago
13
[BUG] <PGAP failed with lengthy output>
#176
brittonstrickland
closed
2 years ago
7
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