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ndierckx
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NOVOPlasty
NOVOPlasty - The organelle assembler and heteroplasmy caller
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Selecting a seed
#133
dcraheem
closed
4 years ago
4
Can't open file [file name] , No such file or directory
#132
dcraheem
opened
4 years ago
7
heteroplasmic assembly not at heteroplasmic position
#131
rspfau
opened
4 years ago
14
Questions about heteroplasmy results
#130
OmonkeyGOD
opened
4 years ago
13
Having trouble understanding VCF file
#129
OmonkeyGOD
closed
4 years ago
1
Any chance to proceed very short reads?
#128
OmonkeyGOD
closed
4 years ago
2
Not resolving the inverted repeats in mito_plant mode
#127
SaiReddy-A
closed
4 years ago
2
different output contigs
#126
LluisGarciaMir
opened
4 years ago
15
Assembly length shorter than expected and strange values in output
#125
mchialva
opened
4 years ago
13
Assembly indefinitly extending by repeating a short sequence
#124
ClemSc
opened
4 years ago
4
General questions
#123
jhcaddisfly
opened
4 years ago
5
Extending Assembly from Seed
#122
nsmt89
opened
4 years ago
22
Invalid Seed and Subsampled fraction: 0.00 %
#121
shearingham
closed
4 years ago
13
NOVOPlast3.8.pl
#120
scrameri
closed
4 years ago
1
only small contig
#119
jhcaddisfly
opened
4 years ago
2
Weird statistics in the log file
#118
DenisGoryunov
opened
4 years ago
17
Incorrect File Format
#117
jokelley
opened
4 years ago
20
Cannot open perl script
#116
Chloisf
closed
4 years ago
7
Plastomes - loss of one IR
#115
matiaskohler
closed
4 years ago
1
The suitable length of seed?
#114
LIZW2019
closed
4 years ago
1
How to deal with multiple libraries?
#113
LIZW2019
closed
4 years ago
1
How to deal with degenerate bases?
#112
yangyang9608
closed
4 years ago
4
set platform in configure file
#111
uzma-researcher
closed
4 years ago
5
Invalid Seed Input
#110
Angele97
closed
4 years ago
0
Duplicated contig names
#109
JFWolters
opened
4 years ago
1
Long read as input
#108
AmaliT
closed
4 years ago
7
run two dataset at the same time with paired-end reads
#107
MjelleLab
closed
4 years ago
4
How to link those contigs into a circle by manul
#106
Yahagi-yz
opened
4 years ago
2
images
#105
ndierckx
opened
4 years ago
0
Interpreting VCF file results
#104
elsemikk
closed
1 year ago
3
Does seed choice create gaps?
#103
Astahlke
closed
5 years ago
2
No Contigs* file in results
#102
ggoralski
opened
5 years ago
10
Question: Assembly excluding seed
#101
weedcentipede
closed
5 years ago
2
What does "END_REVERSE" mean, and how to continue from here?
#100
vanbeveren
closed
5 years ago
4
The * at the end of the assembled chloroplast genome
#99
Silverfoxcome
closed
5 years ago
5
batch function breaks if individual assembly goes awry
#98
bishopia
closed
4 years ago
4
Reference - genome or mitochondria?
#97
MjelleLab
closed
5 years ago
1
choose correct seed when doing mt-genome assembly
#96
MjelleLab
closed
5 years ago
1
700bp contigs, failing to assemble
#95
FSciammarella
closed
4 years ago
4
Raw or trimmed data set as input?
#94
Silverfoxcome
closed
7 months ago
3
How to choose between the 8 Options of chloroplast genome?
#93
Silverfoxcome
closed
7 months ago
3
regex error?
#92
siknkrt
closed
5 years ago
2
Running time
#91
Silverfoxcome
closed
1 year ago
7
help for detecting heteroplasmy
#90
Mirror1211
closed
1 year ago
43
Input reads have and incorrect file format
#89
Silverfoxcome
closed
5 years ago
2
Is there a single-end read workaround?
#88
srgill2
closed
1 year ago
5
Output missing assembled contigs
#87
JFWolters
closed
7 months ago
15
Paired has to be 'SE' or 'PE', please check the configuration file!
#86
hgreenia
closed
4 years ago
1
assembledQuantifier follows nothing in regex
#85
siknkrt
closed
5 years ago
4
Jobs repeatedly killed
#84
JFWolters
closed
5 years ago
7
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