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NOVOPlasty
NOVOPlasty - The organelle assembler and heteroplasmy caller
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Circularised assembly doesn't make any sense
#181
Bibi82
opened
2 years ago
3
Unintended Subsampling
#180
luisamarins
opened
2 years ago
9
depth of coverage
#179
Bibi82
closed
2 years ago
2
Output path does not work
#178
aburzynski
closed
2 years ago
5
INVALID SEED, PLEASE TRY AGAIN WITH A NEW ONE
#177
karl1926
opened
2 years ago
13
Can NOVOPlasty be used to assembly nuclear gene?
#176
yiranzhimo
opened
3 years ago
1
What's the difference between {Seed Input} and {Reference sequence}
#175
kuangzhuoran
closed
1 year ago
2
Identification of possible contamination
#174
ycuenot
opened
3 years ago
4
Genome Range for chloro
#173
anupullanhi
closed
1 year ago
2
Asterisk in middle of sequence
#172
Toral-Manvar
opened
3 years ago
2
Results and input are the same size
#171
bioramg
closed
3 years ago
2
Running NOVOPlasty and Receiving a Platform Error
#170
occasional-it-guy
closed
3 years ago
5
is it possible to run NOVOPlasty on pooled individuals to increase coverage?
#169
TeresaPegan
closed
3 years ago
2
mtDNA assembly starts at random position
#168
dana-obk
opened
3 years ago
11
non-standard base calls in front of outcome contigs
#167
commang1
opened
3 years ago
2
CCS HiFi PacBio reads
#166
dabitz
opened
3 years ago
2
Assembledsubstr outside of string
#165
leilanvieira
opened
3 years ago
3
Config file mismatch?
#164
ulaszewski
closed
3 years ago
1
Redundancy In Assembly of Test Set for Chloroplasts
#163
Franny97
closed
3 years ago
4
Assembly freezes
#162
bioramg
opened
3 years ago
3
Question about specific name for config files
#161
occasional-it-guy
closed
3 years ago
1
Question about speed of assembly
#160
RyanGawryluk
opened
3 years ago
3
Allow for multiple seeds
#159
FSciammarella
opened
3 years ago
4
Does NovoPlasty support reads obtained from the DNBseq sequencing platform?
#158
cefafalopodo
opened
3 years ago
3
Poly-A/poly-T soft clipping
#157
roomfortwo
closed
3 years ago
5
many short contigs in mito_plant mode
#156
SaiReddy-A
closed
3 years ago
4
the contig is the same as the seed
#155
yeseniavegasanchez
opened
3 years ago
2
Issue with input reads.
#154
athulmenon
closed
3 years ago
4
qsub issue: file not found
#153
rspfau
closed
3 years ago
4
Heteroplasmy and mitogenome assembly questions
#152
brenna-levine
closed
3 years ago
21
Seed sequence for plant mitochondrial genome
#151
bioramg
opened
3 years ago
7
Out of Memory / 'Max memory' can only be an integer, the amount is always in GB of RAM, don't add a unit!
#150
bioramg
closed
3 years ago
4
invalid seed
#149
sha1987-sss
opened
3 years ago
1
Empty files but "The genome has been circularized"
#148
mjnetherland19
closed
3 years ago
12
Invalid seed issue
#147
brenna-levine
closed
3 years ago
1
Subsampled fraction: 100.00 % & INVALID SEED
#146
OmonkeyGOD
closed
3 years ago
5
Recovered fragment is shorter than expected
#145
m-statham
closed
3 years ago
3
regex issue
#144
brunonevado
closed
4 years ago
1
max memory parameter ignored
#143
LorenaDerezanin
closed
4 years ago
4
Why is the genome not circularized ?
#142
Chloisf
opened
4 years ago
5
excess memory usage using merged read files
#141
rspfau
opened
4 years ago
11
Test data for heteroplasmy
#140
stephanflemming
opened
4 years ago
5
Tag a 3.8.* release
#139
druvus
closed
4 years ago
2
Different output fasta file names
#138
dcraheem
closed
4 years ago
2
Two merge options with identical assemblies.
#137
OmonkeyGOD
closed
4 years ago
2
Different assembly analysis sharing the same genome length
#136
dtomas1989
opened
4 years ago
10
invalid seed
#135
Nickdykstra
closed
4 years ago
6
Issue with the seed
#134
foala
closed
3 years ago
14
Selecting a seed
#133
dcraheem
closed
4 years ago
4
Can't open file [file name] , No such file or directory
#132
dcraheem
opened
4 years ago
7
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