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ndierckx
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NOVOPlasty
NOVOPlasty - The organelle assembler and heteroplasmy caller
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Assembled contigs can not be circularized
#233
taha-lang
opened
2 weeks ago
2
Low subsampling fraction
#232
kwantn
opened
3 weeks ago
0
Novoplasty Completed Successfully but Did Not Produce Contigs in Output File
#231
meeranhussain
opened
1 month ago
6
seed.fasta
#230
Mariamdar
closed
2 months ago
1
Novoplasty on metagenomic data
#229
pguenzi-tiberi
opened
4 months ago
1
seed for nematodes
#228
ak-akku
opened
5 months ago
1
NOVOPlasty ran successfully but did not generate a contig
#227
laribritto
opened
5 months ago
5
Heteroplasmy results interpretation
#226
LiviaT93
opened
6 months ago
0
Visualization with Circos
#225
laribritto
opened
6 months ago
1
The genome has been circularized, but 2 different contigs
#224
LiviaT93
opened
6 months ago
5
Minimum header requirements to be accepted as input?
#223
lightworms
opened
6 months ago
2
Input data metrics explanation, % of mtDNA reads of the total sequence reads that mapped to the whole mtDNA_follow up
#222
AliBasuony2022
opened
7 months ago
8
Input file format
#221
lightworms
closed
7 months ago
3
Input File Format
#220
tetrahedraldogwood
opened
7 months ago
1
.
#219
hitchcockjm
closed
7 months ago
0
substr outside of string
#218
olepais
opened
7 months ago
1
The two input files are identical, please check the configuration file!
#217
qiguaidedashan
opened
7 months ago
3
Input data metrics explanation, % of mtDNA reads of the total sequence reads that mapped to the whole mtDNA
#216
AliBasuony2022
closed
8 months ago
5
Using Nanophore reads for Mitochondrial Genome assembly
#215
Millawati
closed
9 months ago
4
I can't get NOVOPlasty to work.
#214
rikeleyp
opened
10 months ago
1
Single end reads error-No input file found, make sure it are fastq files No such file or directory
#213
dimserg
opened
11 months ago
1
Novoplasty memory error
#212
snashraf
opened
1 year ago
1
Read Length 151 versus 150
#211
Phismil
closed
1 year ago
2
Query about "Input data metrics" section in log file
#210
daniellesloan
closed
1 year ago
1
NovoPlasty assembly either freezes or never ends
#209
aubac
opened
1 year ago
1
Incorrect Input data metrics in log files in the batch mode
#208
DenisGoryunov
closed
1 year ago
16
Read Length option of the config file after adapter trimming
#207
DenisGoryunov
opened
1 year ago
0
Input reads have incorrect file format
#206
cebos
opened
1 year ago
10
Shifts of initial point in plastid assembly in comparison to the reference depending on k-mer length
#205
AndriiTarieiev
opened
1 year ago
4
Sing end reads is ok?
#204
deyuanyang
opened
1 year ago
1
Multiple CPUs for Novoplasty?
#203
manjumoorthy95
opened
1 year ago
1
Failed Assembly / Extremely small contig
#202
cebos
opened
1 year ago
1
AN INCORRECT FILE FORMAT!
#201
wangwenzheng-agis
opened
1 year ago
3
Building Hash Table...Killed
#200
Ekgachai
opened
1 year ago
5
Clarification about insert size
#199
dhananyashunmugam
closed
1 year ago
0
Plant Mitochondria Genome Output
#198
nsmt89
opened
1 year ago
0
assembledsubstr outside of string at NOVOPlasty4.3.1.pl line
#197
ianaebutler
opened
2 years ago
0
config.txt
#196
rrk0015
closed
2 years ago
0
How to use the batch NOVOplasty
#195
xiaohan23
opened
2 years ago
2
NOVOplasty error assembly
#194
labrechai
closed
2 years ago
2
NOVOPlasty4.3.pl: command not found
#193
pshtiwan
opened
2 years ago
3
Orientation problem of some chloroplast genome
#192
Mohammada1994
closed
2 years ago
1
How to generate Seed input file?
#191
meeranhussain
closed
2 years ago
3
Average Organelle Coverage – not always in the log file?
#190
akimmitt
closed
2 years ago
5
Retrieve Seed killed
#189
wyy0945
closed
2 years ago
3
What's the meaning of KWWM and SCTWW in the assembled sequences?
#188
CS-CH
closed
2 years ago
1
Use of freed value in iteration
#187
zjlahey
opened
2 years ago
10
running software but displayed "permission denied"
#186
20182531027
closed
2 years ago
1
Using Nanopore and Illumina combined reads for Mitochondrial Genome Assembly
#185
manjumoorthy95
opened
2 years ago
1
plant mitochondria genomes
#184
fengyuanli304
opened
2 years ago
1
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