ndierckx NOVOPlasty issues

ndierckx / NOVOPlasty

NOVOPlasty - The organelle assembler and heteroplasmy caller

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Assembled contigs can not be circularized

#233 taha-lang opened 2 weeks ago
2
Low subsampling fraction

#232 kwantn opened 3 weeks ago
0
Novoplasty Completed Successfully but Did Not Produce Contigs in Output File

#231 meeranhussain opened 1 month ago
6
seed.fasta

#230 Mariamdar closed 2 months ago
1
Novoplasty on metagenomic data

#229 pguenzi-tiberi opened 4 months ago
1
seed for nematodes

#228 ak-akku opened 5 months ago
1
NOVOPlasty ran successfully but did not generate a contig

#227 laribritto opened 5 months ago
5
Heteroplasmy results interpretation

#226 LiviaT93 opened 6 months ago
0
Visualization with Circos

#225 laribritto opened 6 months ago
1
The genome has been circularized, but 2 different contigs

#224 LiviaT93 opened 6 months ago
5
Minimum header requirements to be accepted as input?

#223 lightworms opened 6 months ago
2
Input data metrics explanation, % of mtDNA reads of the total sequence reads that mapped to the whole mtDNA_follow up

#222 AliBasuony2022 opened 7 months ago
8
Input file format

#221 lightworms closed 7 months ago
3
Input File Format

#220 tetrahedraldogwood opened 7 months ago
1
.

#219 hitchcockjm closed 7 months ago
0
substr outside of string

#218 olepais opened 7 months ago
1
The two input files are identical, please check the configuration file!

#217 qiguaidedashan opened 7 months ago
3
Input data metrics explanation, % of mtDNA reads of the total sequence reads that mapped to the whole mtDNA

#216 AliBasuony2022 closed 8 months ago
5
Using Nanophore reads for Mitochondrial Genome assembly

#215 Millawati closed 9 months ago
4
I can't get NOVOPlasty to work.

#214 rikeleyp opened 10 months ago
1
Single end reads error-No input file found, make sure it are fastq files No such file or directory

#213 dimserg opened 11 months ago
1
Novoplasty memory error

#212 snashraf opened 1 year ago
1
Read Length 151 versus 150

#211 Phismil closed 1 year ago
2
Query about "Input data metrics" section in log file

#210 daniellesloan closed 1 year ago
1
NovoPlasty assembly either freezes or never ends

#209 aubac opened 1 year ago
1
Incorrect Input data metrics in log files in the batch mode

#208 DenisGoryunov closed 1 year ago
16
Read Length option of the config file after adapter trimming

#207 DenisGoryunov opened 1 year ago
0
Input reads have incorrect file format

#206 cebos opened 1 year ago
10
Shifts of initial point in plastid assembly in comparison to the reference depending on k-mer length

#205 AndriiTarieiev opened 1 year ago
4
Sing end reads is ok?

#204 deyuanyang opened 1 year ago
1
Multiple CPUs for Novoplasty?

#203 manjumoorthy95 opened 1 year ago
1
Failed Assembly / Extremely small contig

#202 cebos opened 1 year ago
1
AN INCORRECT FILE FORMAT!

#201 wangwenzheng-agis opened 1 year ago
3
Building Hash Table...Killed

#200 Ekgachai opened 1 year ago
5
Clarification about insert size

#199 dhananyashunmugam closed 1 year ago
0
Plant Mitochondria Genome Output

#198 nsmt89 opened 1 year ago
0
assembledsubstr outside of string at NOVOPlasty4.3.1.pl line

#197 ianaebutler opened 2 years ago
0
config.txt

#196 rrk0015 closed 2 years ago
0
How to use the batch NOVOplasty

#195 xiaohan23 opened 2 years ago
2
NOVOplasty error assembly

#194 labrechai closed 2 years ago
2
NOVOPlasty4.3.pl: command not found

#193 pshtiwan opened 2 years ago
3
Orientation problem of some chloroplast genome

#192 Mohammada1994 closed 2 years ago
1
How to generate Seed input file?

#191 meeranhussain closed 2 years ago
3
Average Organelle Coverage – not always in the log file?

#190 akimmitt closed 2 years ago
5
Retrieve Seed killed

#189 wyy0945 closed 2 years ago
3
What's the meaning of KWWM and SCTWW in the assembled sequences?

#188 CS-CH closed 2 years ago
1
Use of freed value in iteration

#187 zjlahey opened 2 years ago
10
running software but displayed "permission denied"

#186 20182531027 closed 2 years ago
1
Using Nanopore and Illumina combined reads for Mitochondrial Genome Assembly

#185 manjumoorthy95 opened 2 years ago
1
plant mitochondria genomes

#184 fengyuanli304 opened 2 years ago
1