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nerettilab
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RepEnrich2
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
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Use in ChIP Seq Analysis
#31
jesswhitts
opened
8 months ago
0
Sample processing time
#30
zonzero
opened
1 year ago
0
Differential expression analysis
#29
matwgmkw
opened
1 year ago
0
index for step 3
#28
matwgmkw
closed
1 year ago
1
More questions
#27
matwgmkw
closed
1 year ago
1
Got stuck with RepEnrich2
#26
matwgmkw
closed
1 year ago
3
RepEnrich with different aligner?
#25
richardheery
closed
2 years ago
1
RepEnrich2 gets stuck without error message
#24
mmisak
opened
2 years ago
10
For non-model organism
#23
RadPa
closed
3 years ago
2
Simple, low-complexity repeats and blacklisted region filtering
#22
sirjuanjo
closed
3 years ago
1
RepEnrich2_setup error
#21
xiaoyonf
closed
3 years ago
2
suggested bowtie2 parameters for RepEnrich2
#20
akmorrow13
closed
3 years ago
3
Update README.md
#19
johanzi
opened
3 years ago
0
Preprocessing of FASTQ data prior to RepEnrich2 analysis
#18
rauldiul
closed
4 years ago
1
Keep alignments to metagenome
#17
adomingues
closed
4 years ago
1
RepEnrich2_subset.py rna-seq PE error
#16
Runuply
closed
5 years ago
6
RepEnrich2_setup.py
#15
Danielchan1324
closed
5 years ago
3
RepEnrich2_setup.py
#14
Danielchan1324
closed
5 years ago
0
Error: Bowtie2 or BEDTools not loaded
#13
ConYel
closed
5 years ago
9
Include hg38 setup
#12
roryk
opened
5 years ago
0
Question about normalisation
#11
re2srm
closed
5 years ago
2
Estimating progress
#10
re2srm
closed
5 years ago
1
Repetitive elements coordinates
#9
iramai
closed
5 years ago
6
What results use for further analysis
#8
iramai
closed
5 years ago
3
About fasta file
#7
Yuanyuan84
closed
5 years ago
1
About repeatmasker.bed file in human
#6
Yuanyuan84
closed
5 years ago
3
Computing time
#5
Rdroit
opened
6 years ago
5
KeyError issue although I am using bedtools 2.23.0
#4
gp79
closed
6 years ago
1
Run time
#3
rtmag
closed
6 years ago
1
Update README.md
#2
scriscio
closed
7 years ago
0
RepEnrich2_subset.py codified as dos file in current version
#1
rlarrosa1
closed
7 years ago
0