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nextstrain
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forecasts-ncov
SARS-CoV-2 variant growth rates and frequency forecasts
https://nextstrain.org/sars-cov-2/forecasts/
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Unpin nextstrain/base image once evofr has been updated
#57
joverlee521
closed
11 months ago
0
workflow/run-models: pin nextstrain/base image
#56
joverlee521
closed
1 year ago
1
Update viz library to use JSON-defined colours
#55
jameshadfield
closed
1 year ago
0
Post process model JSONs
#54
jameshadfield
closed
1 year ago
1
deploy-viz-app workflow: update path pattern
#53
joverlee521
closed
1 year ago
0
bugfix - fix lineages locations
#52
jameshadfield
closed
1 year ago
0
Remove hierarchical location from frequency panel
#51
jameshadfield
closed
1 year ago
1
Adding raw frequencies to JSON
#50
marlinfiggins
closed
1 year ago
9
ingest: remove US case count scripts/steps
#49
joverlee521
closed
1 year ago
0
Prepare data error
#48
joverlee521
closed
1 year ago
0
Update viz library
#47
jameshadfield
closed
1 year ago
0
Remove static image generation steps/workflow
#46
joverlee521
closed
1 year ago
0
Replace "recombinant" clade with label "other"
#45
trvrb
closed
10 months ago
2
Include model run date in abstract
#44
jameshadfield
closed
1 year ago
1
Support hierarchical models
#43
marlinfiggins
closed
1 year ago
14
Update viz to replace renewal panels with MLR lineage panels
#42
trvrb
closed
1 year ago
1
Update README files
#41
jameshadfield
closed
1 year ago
0
chore: replace snakemake message directive with comment
#40
corneliusroemer
closed
1 year ago
1
Simplify pango collapsing by using pango_aliasor package
#39
corneliusroemer
closed
1 year ago
6
TypeError: Object of type ArrayImpl is not JSON serializable
#38
corneliusroemer
opened
1 year ago
5
Fix trigger for static images
#37
joverlee521
closed
1 year ago
0
Update viz library
#36
jameshadfield
closed
1 year ago
1
Collapse rare Pango lineages
#35
trvrb
closed
1 year ago
2
Include MLR estimates for Pango lineages
#34
trvrb
closed
1 year ago
1
Switch to 22B (BA.5) baseline and force inclusion of 23B
#33
trvrb
closed
1 year ago
0
Counts update doesn't invalidate CloudFront
#32
trvrb
closed
1 year ago
0
Update viz library
#31
jameshadfield
closed
1 year ago
2
Summarize lineage counts
#30
trvrb
closed
1 year ago
2
Add workflow to deploy viz app to GH pages
#29
joverlee521
closed
1 year ago
1
Add 23B (Omicron) variant
#28
joverlee521
closed
1 year ago
3
Update viz library
#27
joverlee521
closed
1 year ago
0
Forcing mlr models to forecast until `forecast_L` days from present.
#26
marlinfiggins
closed
1 year ago
0
fix: Add `--cores` to gh actions nextstrain build
#25
corneliusroemer
closed
1 year ago
0
Import viz code as a library
#24
jameshadfield
closed
1 year ago
4
Adding forecast capabilities for MLR and Renewal equation model
#23
marlinfiggins
closed
1 year ago
7
Import viz code as a library
#22
jameshadfield
closed
1 year ago
3
Update uses of conda-incubator/setup-miniconda@v2 (part 2)
#21
victorlin
closed
1 year ago
0
Update uses of conda-incubator/setup-miniconda@v2
#20
joverlee521
closed
1 year ago
0
Update US case counts source
#19
joverlee521
closed
1 year ago
1
update-*-clade-counts: use `--freeze-installed`
#18
joverlee521
closed
1 year ago
1
Viz updates
#17
joverlee521
closed
1 year ago
0
Update US case counts source
#16
joverlee521
opened
1 year ago
3
Broader viz suggestions
#15
joverlee521
closed
1 year ago
1
Requested viz updates
#14
joverlee521
closed
1 year ago
0
Updating GARW priors to be consistent wtih notebooks
#13
marlinfiggins
closed
1 year ago
0
Trigger viz
#12
joverlee521
closed
1 year ago
0
Init MCMC from MAP estimates
#11
marlinfiggins
closed
1 year ago
0
Adding pivot variable to config
#10
marlinfiggins
closed
1 year ago
0
Move all outputs to public S3 bucket
#9
joverlee521
closed
1 year ago
3
Visualisation of model results (interactive + static)
#8
jameshadfield
closed
1 year ago
2
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