nextstrain forecasts-ncov issues

nextstrain / forecasts-ncov

SARS-CoV-2 variant growth rates and frequency forecasts

https://nextstrain.org/sars-cov-2/forecasts/

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issues

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Add new colors for new clades

#111 corneliusroemer closed 1 week ago
1
dev: Stop using Mambaforge in CI; the Miniforge3 installer is now equivalent

#110 tsibley closed 4 weeks ago
0
Adding time-varying hierarchical model

#109 marlinfiggins opened 1 month ago
1
Update clade definitions

#108 trvrb closed 1 month ago
1
Failure in genbank/clade-counts

#107 joverlee521 opened 3 months ago
1
Add clade definition for 24C

#106 joverlee521 closed 3 months ago
1
Add .gitattributes file

#105 genehack closed 3 months ago
0
Model workflow failing

#104 joverlee521 closed 3 months ago
4
ingest: Update vendored scripts

#103 joverlee521 opened 4 months ago
0
Refactor case counts workflow

#102 joverlee521 closed 4 months ago
0
Switch AWS credentials from a long-lived IAM user to short-lived role sessions

#101 tsibley closed 4 months ago
0
Add QC for clade sequence counts

#100 joverlee521 opened 5 months ago
0
Reduce location count thresholds

#99 trvrb closed 5 months ago
2
Reduce clade count threshold

#98 trvrb closed 5 months ago
1
Revisit sequence data inclusion thresholds

#97 joverlee521 closed 5 months ago
2
Update viz library

#96 joverlee521 closed 6 months ago
0
update-ncov-case-counts: Use GitHub org variable for AWS region

#95 victorlin closed 6 months ago
0
Add clade definitions for 24A and 24B

#94 joverlee521 closed 6 months ago
4
Bump actions/configure-pages from 4 to 5

#93 dependabot[bot] opened 7 months ago
0
Stream metadata from S3, filter, and compress

#92 huddlej closed 7 months ago
3
update-ncov-gisaid-clade-counts: Bump memory

#91 joverlee521 closed 7 months ago
0
viz: Add growth advantage scatterplots

#90 joverlee521 opened 8 months ago
0
Update Pango lineage pivots to JN.1

#89 joverlee521 closed 8 months ago
5
Bump actions/checkout from 2 to 4

#88 dependabot[bot] closed 6 months ago
1
Pin pandas<2.2.0

#87 victorlin closed 9 months ago
1
Bump actions/upload-pages-artifact from 1 to 3

#86 dependabot[bot] opened 9 months ago
0
Bump actions/deploy-pages from 1 to 4

#85 dependabot[bot] opened 9 months ago
0
Bump conda-incubator/setup-miniconda from 2 to 3

#84 dependabot[bot] closed 6 months ago
1
Bump actions/configure-pages from 3 to 4

#83 dependabot[bot] closed 9 months ago
1
Bump actions/setup-node from 3 to 4

#82 dependabot[bot] closed 9 months ago
1
ingest: restore CloudFront invalidation in upload

#81 joverlee521 closed 9 months ago
1
Reduce disk write of 20+GB metadata file by filtering on the fly

#80 corneliusroemer closed 7 months ago
2
fix: lineage_to_clade missed a `.`

#79 corneliusroemer closed 10 months ago
1
Add provisional colors for new clades 23G/H/I

#78 corneliusroemer closed 11 months ago
4
Sync location threshold text with values in config

#77 corneliusroemer opened 11 months ago
0
Country include description out of sync?

#76 corneliusroemer opened 11 months ago
2
Add new Nextstrain clade definitions

#75 joverlee521 closed 10 months ago
1
Send Slack notifications for clades without definition

#74 joverlee521 opened 11 months ago
0
Add default clade color

#73 joverlee521 closed 11 months ago
1
Simplify viz for local files

#72 jameshadfield closed 11 months ago
0
Flag potential lineages for new Nextstrain clades

#71 joverlee521 opened 12 months ago
1
Allow force include of Pango lineages that might not meet threshold

#70 joverlee521 opened 12 months ago
0
Add recombinant clade definition

#69 joverlee521 closed 1 year ago
1
ingest/fetch-ncov-global-case-counts: follow redirection

#68 joverlee521 closed 1 year ago
0
Unify colour & display name setting for all models

#67 jameshadfield closed 1 year ago
4
Update lineage colour definitions

#66 jameshadfield closed 1 year ago
2
workflows/run-models: Unpin nextstrain-base image

#65 joverlee521 closed 1 year ago
1
Force include locations

#64 corneliusroemer opened 1 year ago
1
Document which `geo_resolution`'s are available

#63 corneliusroemer closed 1 year ago
0
Clean up workflows

#62 joverlee521 closed 1 year ago
2