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nextstrain
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seasonal-cov
Nextstrain build for seasonal coronaviruses
https://nextstrain.org/seasonal-cov/
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Convert triple-quoted shell commands to "raw" style [#39]
#40
genehack
closed
1 month ago
0
Convert to raw triple-quoted strings per best practices
#39
genehack
closed
1 month ago
0
Lock clock rates for 229E and OC43 [#36]
#38
genehack
opened
2 months ago
0
Add S1 mutation count coloring
#37
genehack
opened
2 months ago
0
Add fixed clock rates for all strains
#36
genehack
opened
2 months ago
1
Update phylo description with curated data download links [#25]
#35
genehack
closed
2 months ago
0
Add ingest-to-phylogenetic GitHub Action... [#14]
#34
genehack
closed
2 months ago
4
Remove `traits` rule and associated config [#32]
#33
genehack
closed
2 months ago
0
Remove traits rule
#32
genehack
closed
2 months ago
0
Convert to new `augur curate` commands; update ingest/vendored subrepo [#26]
#31
genehack
closed
3 months ago
1
Exclude passaged strains
#30
genehack
closed
3 months ago
0
Exclude cell-passaged strains; remove `passage_type` annotations
#29
genehack
closed
3 months ago
0
Re-organize configuration files to match pathogen repo guide [#27]
#28
genehack
closed
3 months ago
0
Rearrange configuration to conform to repo setup guide
#27
genehack
closed
3 months ago
0
ingest: use new augur curate commands
#26
joverlee521
closed
3 months ago
0
Document dowload location for data files in description.md
#25
genehack
closed
2 months ago
0
Refactor auspice config and add description.md
#24
genehack
closed
3 months ago
0
Update description.md to properly cite sources, share data
#23
genehack
closed
3 months ago
0
Consolidate auspice.json files
#22
genehack
closed
3 months ago
0
Finalize data display [#20]
#21
genehack
closed
3 months ago
1
Finalize datasets
#20
genehack
closed
3 months ago
1
Attribute data source [#18]
#19
genehack
closed
4 months ago
1
add attribution
#18
genehack
closed
4 months ago
0
Final tweaks 16
#17
genehack
closed
4 months ago
0
Final(?) tweaks
#16
genehack
closed
4 months ago
0
Exclude PP810610.1 from 229e data [#12]
#15
genehack
closed
4 months ago
1
Automate updates
#14
genehack
closed
2 months ago
1
Publish current dataset to nextstrain.org
#13
genehack
closed
3 months ago
3
Review current status
#12
genehack
closed
4 months ago
2
Add CI
#11
genehack
closed
4 months ago
8
Add pre commit
#10
genehack
closed
4 months ago
6
Add pre-commit config
#9
genehack
closed
4 months ago
0
Add CI for ingest-then-phylogenetic
#8
genehack
closed
4 months ago
0
Cleanup 6
#7
genehack
closed
4 months ago
3
Cleanup
#6
genehack
closed
4 months ago
0
git subrepo commit (merge) ingest/vendored
#5
genehack
closed
5 months ago
0
Ingest update
#4
genehack
closed
5 months ago
0
Update phylo workflow
#3
genehack
closed
5 months ago
8
phylogenetic build fails because of missing nextalign
#2
genehack
closed
5 months ago
5
ingest: Sync vendored scripts
#1
victorlin
closed
12 months ago
0