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nf-core
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differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
https://nf-co.re/differentialabundance
MIT License
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37
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Failed to publish file => double forward slashes
#261
nick-youngblut
opened
7 months ago
0
GSEA html reports have broken links to png and TSV files
#260
vmkalbskopf
closed
6 months ago
1
Bump gtf2featureannotation to fix GTF handling error
#259
pinin4fjords
closed
7 months ago
1
Error in TABULAR_TO_GSEA_CHIP
#258
acpicornell
opened
7 months ago
4
Some fixes before the upcoming release
#257
WackerO
closed
6 months ago
2
Release 1.5.0
#256
WackerO
closed
6 months ago
2
Version bump in preparation of release 1.5.0
#255
WackerO
closed
8 months ago
1
Some parameter changes, added qbic credits
#254
WackerO
closed
8 months ago
2
Adding some explanations and removing spelling errors
#253
rezaeinfo
closed
6 months ago
7
Process `NFCORE_DIFFERENTIALABUNDANCE:DIFFERENTIALABUNDANCE:GTF_TO_TABLE (gencode)` terminated with an error exit status (125)
#252
dgoswamia
closed
8 months ago
4
release differentialabundance
#251
WackerO
closed
4 months ago
1
Merging template updates for v2.13.1
#250
WackerO
closed
8 months ago
2
Error with samplesheet.csv with two column headers that have prefix in common
#249
aghr
closed
1 week ago
16
Please pin the version of the nf-validation plugin!
#248
mirpedrol
closed
8 months ago
1
Continuous covariates
#247
BEFH
opened
8 months ago
8
Important! Template update for nf-core/tools v2.13.1
#246
nf-core-bot
closed
8 months ago
0
Name of blocking variable not correctly recognized
#245
aghr
closed
1 week ago
8
Matrixfilter NA options
#244
WackerO
closed
8 months ago
1
Dev version: On parameters website list parameter gene_sets_files in section GSEA
#243
aghr
opened
9 months ago
1
URGENT: pin nf-validation version
#242
nvnieuwk
closed
9 months ago
2
Merging template updates for v2.13
#241
WackerO
closed
9 months ago
1
Publish gsea reports
#240
pinin4fjords
closed
8 months ago
1
Remove parameter --gsea_run
#239
aghr
closed
8 months ago
1
Mark --matrix as a required parameter in the parameter section on the diffabundance website
#238
aghr
opened
9 months ago
1
DiffAbundance v1.4.0 does not work with most recent nextflow 23.10.1.5891
#237
aghr
closed
8 months ago
3
Important! Template update for nf-core/tools v2.13
#236
nf-core-bot
closed
9 months ago
0
Differential expression at transcript level
#235
fpsanz
closed
5 months ago
6
Setting differential_subset_to_contrast_samples: true with output from nfcore rnaseq causes error
#234
aghr
closed
2 weeks ago
3
Add note on scaling
#233
pinin4fjords
closed
9 months ago
2
Mention missing dots in report volcano
#232
WackerO
closed
8 months ago
3
GSEA update
#231
WackerO
closed
9 months ago
1
RMARKDOWNNOTEBOOK - Error in \`cor()\`: ! supply both 'x' and 'y' or a matrix-like 'x'
#230
tracelail
opened
9 months ago
3
Report volcano plot will now also plot points with pval 0
#229
WackerO
closed
8 months ago
8
Important! Template update for nf-core/tools v2.12
#228
nf-core-bot
closed
9 months ago
3
Plotting of data where the p-value is zero
#227
kdivilov
closed
8 months ago
2
DESEQ2_NORM bugfix
#226
WackerO
closed
10 months ago
2
updated module affy_justrma to newest version in nf-core
#225
suzannejin
closed
10 months ago
1
Command error: .command.sh: line 3: gtf2featureAnnotation.R: command not found
#224
MustafaElshani
closed
10 months ago
1
tabulartogseacls fixes
#223
pinin4fjords
closed
10 months ago
2
Round numeric report tables
#222
WackerO
closed
10 months ago
2
Update shinyngs modules to address density plots issue
#221
pinin4fjords
closed
10 months ago
2
technical replicates
#220
animesh
opened
11 months ago
4
Important! Template update for nf-core/tools v2.11.1
#219
nf-core-bot
closed
11 months ago
1
incomplete matches of variable name
#218
fruce-ki
closed
10 months ago
1
pandoc conversion failed in differential abundance test run
#217
Christina002128
closed
10 months ago
4
Important! Template update for nf-core/tools v2.11
#216
nf-core-bot
closed
11 months ago
1
Errors thrown out in NFCORE_DIFFERENTIALABUNDANCE:DIFFERENTIALABUNDANCE:DESEQ2_DIFFERENTIAL
#215
CrazyHsu
closed
11 months ago
3
PLOT_EXPLORATORY module breaks with large number of samples.
#214
kai-lawsonmcdowall
opened
11 months ago
1
Fix volcano plot legend
#213
pinin4fjords
closed
11 months ago
1
Final report, volcano plot: points wrongly marked red
#212
mtruglio
closed
11 months ago
1
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