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nf-core
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differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
https://nf-co.re/differentialabundance
MIT License
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RMARKDOWNNOTEBOOK - Error in \`cor()\`: ! supply both 'x' and 'y' or a matrix-like 'x'
#230
tracelail
opened
5 months ago
1
Report volcano plot will now also plot points with pval 0
#229
WackerO
closed
4 months ago
8
Important! Template update for nf-core/tools v2.12
#228
nf-core-bot
closed
5 months ago
3
Plotting of data where the p-value is zero
#227
kdivilov
closed
4 months ago
2
DESEQ2_NORM bugfix
#226
WackerO
closed
5 months ago
2
updated module affy_justrma to newest version in nf-core
#225
suzannejin
closed
5 months ago
1
Command error: .command.sh: line 3: gtf2featureAnnotation.R: command not found
#224
MustafaElshani
closed
5 months ago
1
tabulartogseacls fixes
#223
pinin4fjords
closed
5 months ago
2
Round numeric report tables
#222
WackerO
closed
5 months ago
2
Update shinyngs modules to address density plots issue
#221
pinin4fjords
closed
5 months ago
2
technical replicates
#220
animesh
opened
6 months ago
3
Important! Template update for nf-core/tools v2.11.1
#219
nf-core-bot
closed
6 months ago
1
incomplete matches of variable name
#218
fruce-ki
closed
5 months ago
1
pandoc conversion failed in differential abundance test run
#217
Christina002128
closed
5 months ago
2
Important! Template update for nf-core/tools v2.11
#216
nf-core-bot
closed
6 months ago
1
Errors thrown out in NFCORE_DIFFERENTIALABUNDANCE:DIFFERENTIALABUNDANCE:DESEQ2_DIFFERENTIAL
#215
CrazyHsu
closed
6 months ago
3
PLOT_EXPLORATORY module breaks with large number of samples.
#214
kai-lawsonmcdowall
opened
6 months ago
1
Fix volcano plot legend
#213
pinin4fjords
closed
6 months ago
1
Final report, volcano plot: points wrongly marked red
#212
mtruglio
closed
6 months ago
1
Multiple variables/interactions
#211
mtruglio
opened
7 months ago
2
Include affy timeout fix
#210
pinin4fjords
closed
7 months ago
3
Update matrixfilter
#209
WackerO
closed
5 months ago
4
Fix resource issues and bump versions
#208
pinin4fjords
closed
7 months ago
3
Add singularity to ci
#207
pinin4fjords
closed
7 months ago
1
V1.4.0 fixes
#206
pinin4fjords
closed
7 months ago
3
Dev -> master for v1.4.0
#205
pinin4fjords
closed
7 months ago
2
Release v1.4.0
#204
pinin4fjords
closed
7 months ago
2
Transcript lengths for DESeq2
#203
pinin4fjords
closed
7 months ago
3
Simplify pipeline parameters
#202
WackerO
opened
7 months ago
3
Update DESeq2/Limma
#201
WackerO
closed
7 months ago
2
Document correct RNAseq matrix usage
#200
pinin4fjords
closed
7 months ago
2
Add gprofiler
#199
WackerO
closed
6 months ago
4
Proteomics pipeline does not create the required file for the explotarory plot
#198
erdikucuk
closed
4 months ago
4
Added project info to report
#197
WackerO
closed
5 months ago
8
"exclude" samples aren't respected in SHINYNGS_STATICEXPLORATORY - Error in cor(matrices[[g]]) : supply both 'x' and 'y' or a matrix-like 'x'
#196
olgabot
closed
3 weeks ago
6
Fix sample metadata table in the html report not paginating
#195
davidecarlson
closed
7 months ago
2
Added colors to volcano
#194
WackerO
closed
7 months ago
3
Add DESeq text to report
#193
WackerO
closed
7 months ago
1
Add optional scree plot to report
#192
WackerO
closed
7 months ago
1
Sample metadata table in the html report is not paginating
#191
davidecarlson
closed
1 month ago
2
Fix GSEA indent in report
#190
WackerO
closed
7 months ago
1
Add design to report
#189
WackerO
closed
7 months ago
2
Enable all genes for exploratory
#188
WackerO
closed
7 months ago
1
Switching to rlog for deseq2 vs method truncates pipeline output
#187
tfalkarkea
closed
7 months ago
4
Post 1.3.1 release changes
#186
pinin4fjords
closed
8 months ago
2
Dev -> master for v1.3.1
#185
pinin4fjords
closed
8 months ago
2
Release v1.3.1
#184
pinin4fjords
closed
8 months ago
2
Fix logging for dendrograms
#183
pinin4fjords
closed
8 months ago
2
Correct Jon's employer
#182
pinin4fjords
closed
8 months ago
1
Post-release version bump
#181
WackerO
closed
8 months ago
1
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