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nf-core
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metapep
From metagenomes to epitopes and beyond
https://nf-co.re/metapep
MIT License
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Overview figure update
#94
tillenglert
closed
1 year ago
3
Check and expand Ci tests
#93
tillenglert
closed
1 year ago
9
Bugfix/peptide length check
#92
tillenglert
closed
1 year ago
1
Feature/allow allpep lengths
#91
tillenglert
closed
1 year ago
1
Script headers
#90
tillenglert
closed
1 year ago
1
Bugfix peptide Lengths and include log instead of tsv
#89
tillenglert
closed
1 year ago
2
Update Citations
#88
tillenglert
closed
1 year ago
2
Template update nf-core tools 2.9
#87
tillenglert
closed
1 year ago
1
Adjusted used resource request labels
#86
skrakau
closed
1 year ago
1
Add log file to outdir/logs/ instead of a tsv for the unified model lengths
#85
tillenglert
closed
1 year ago
4
Multiqc
#84
tillenglert
closed
1 year ago
5
Important! Template update for nf-core/tools v2.9
#83
nf-core-bot
closed
1 year ago
1
Add label retry to download proteins process
#82
tillenglert
closed
1 year ago
1
Remove subsampling for now
#81
tillenglert
closed
1 year ago
2
Add tests
#80
skrakau
closed
1 year ago
2
Make versions of pandas and other tools match in all modules
#79
tillenglert
closed
1 year ago
1
New Parameters for pandas memory usage and chunk sizes
#78
tillenglert
closed
1 year ago
2
Delete push to docker hub workflows
#77
tillenglert
closed
1 year ago
1
Subworkflow input check remodeling
#76
tillenglert
closed
1 year ago
4
Peptide length additional checks
#75
tillenglert
closed
1 year ago
3
Peptide lengths can only be set over all alleles
#74
tillenglert
closed
1 year ago
1
Update Epytope version to 3.3.1
#73
tillenglert
closed
1 year ago
5
Remove assets/weights.tsv and update usage.md
#72
skrakau
closed
1 year ago
2
`INPUT_CHECK` subworkflow restructure
#71
tillenglert
closed
1 year ago
3
Supported allele check and show
#70
tillenglert
closed
1 year ago
4
Important! Template update for nf-core/tools v2.8
#69
nf-core-bot
closed
1 year ago
3
Tests for MHCflurry and MHCnuggets
#68
tillenglert
closed
6 months ago
0
Score threshold parameter and documentation on scoring by `SYFPETIHI`, `MHCflurry` and `MHCnuggets`
#67
tillenglert
closed
1 year ago
2
Look into `polars` python library as alternative for `pandas`
#66
tillenglert
opened
1 year ago
0
Bugfix/datamodel figure
#65
tillenglert
closed
1 year ago
1
Docs/update datamodel figure
#64
tillenglert
closed
1 year ago
2
test_mouse fails on github actions (PR on dev)
#63
tillenglert
closed
1 year ago
2
Feat/update prodigal
#62
tillenglert
closed
1 year ago
0
Update docs - more detailed description about data model
#61
skrakau
closed
1 year ago
1
MultiQC
#60
skrakau
closed
1 year ago
0
Update relational data model figure
#59
skrakau
closed
1 year ago
4
Sort input for GENERATE_PROTEIN_AND_ENTITY_IDS to ensure deterministi…
#58
skrakau
closed
1 year ago
1
Use meta map for allele_id and allele_name
#57
tillenglert
opened
1 year ago
2
Doc/docs update
#56
tillenglert
closed
1 year ago
1
Epitopeprediction update
#55
tillenglert
closed
1 year ago
1
Change head to nf-core
#54
skrakau
closed
1 year ago
1
Add documentation about internally used data model
#53
skrakau
closed
1 year ago
1
Use Pandas float_precision param when reading floats
#52
skrakau
closed
1 year ago
2
Make association of entity_ids and microbiome_ids deterministic
#51
skrakau
closed
1 year ago
0
Pre-filter peptides prior prediction
#50
skrakau
opened
1 year ago
0
Update to new Pandas 2.0 release
#49
skrakau
opened
1 year ago
0
Check supported models and handle warnings
#48
skrakau
closed
1 year ago
3
Update containers
#47
skrakau
closed
1 year ago
1
Add more documentation and control taxid input more thoroughly
#46
tillenglert
closed
1 year ago
3
Enable multiple weights for bins
#45
tillenglert
closed
1 year ago
2
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