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nf-core
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metapep
From metagenomes to epitopes and beyond
https://nf-co.re/metapep
MIT License
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Optimize COLLECT_STATS process
#44
skrakau
closed
1 year ago
2
Add full-size test
#43
skrakau
closed
1 year ago
1
Fix CI tests using GitHub secrets
#42
skrakau
closed
1 year ago
1
Clean up CI tests
#41
skrakau
closed
1 year ago
1
Bugfix/bin processing
#40
tillenglert
closed
1 year ago
2
Fix CI tests using NCBI secrets
#39
skrakau
closed
1 year ago
1
Erroneous processing of entities - changed with co-assembly feature
#38
skrakau
closed
1 year ago
0
Current version doesn't work with syfpeithi and mouse alleles
#37
skrakau
closed
1 year ago
1
Add custom script for efficient TSV file concatenation (2)
#36
skrakau
closed
1 year ago
1
Add custom script for efficient TSV file concatenation
#35
skrakau
closed
1 year ago
1
Caching issue of `PREDICT_EPITOPES` results
#34
skrakau
closed
1 year ago
1
Binned score distribution
#33
skrakau
closed
1 year ago
1
Optimize `prepare_score_distribution.py`
#32
skrakau
closed
1 year ago
1
Merging template updates 2.7.2
#31
skrakau
closed
1 year ago
2
Co-assembly input: Resolve redundant protein prediction
#30
tillenglert
closed
1 year ago
4
Add data model figure and included in output.md
#29
skrakau
closed
1 year ago
0
Important! Template update for nf-core/tools v2.7.2
#28
nf-core-bot
closed
1 year ago
0
Important! Template update for nf-core/tools v2.7.1
#27
nf-core-bot
closed
1 year ago
1
Optimize prep entity binding ratios - chunkwise
#26
skrakau
closed
1 year ago
1
Optimize prep entity binding ratios2
#25
skrakau
closed
1 year ago
0
Optimize generate_peptides.py
#24
skrakau
closed
1 year ago
1
Important! Template update for nf-core/tools v2.6
#23
nf-core-bot
closed
1 year ago
1
Important! Template update for nf-core/tools v2.5.1
#22
nf-core-bot
closed
2 years ago
1
Chunk-wise processing of peptides and optimized pandas operations
#21
skrakau
closed
2 years ago
3
Important! Template update for nf-core/tools v2.5
#20
nf-core-bot
closed
2 years ago
2
Merging template 2.4 updates
#19
skrakau
closed
2 years ago
1
Important! Template update for nf-core/tools v2.4
#18
nf-core-bot
closed
2 years ago
1
Integrate epitopeprediction
#17
AntoniaSchuster
closed
1 year ago
2
Merging template updates
#16
AntoniaSchuster
closed
2 years ago
2
Important! Template update for nf-core/tools v2.3.2
#15
nf-core-bot
closed
2 years ago
0
Important! Template update for nf-core/tools v2.3.1
#14
nf-core-bot
closed
2 years ago
1
Update modules
#13
AntoniaSchuster
closed
2 years ago
1
Update documentation
#12
AntoniaSchuster
closed
2 years ago
1
Merge template update 2.3
#11
AntoniaSchuster
closed
2 years ago
1
Important! Template update for nf-core/tools v2.3
#10
nf-core-bot
closed
2 years ago
0
Write documentation
#9
AntoniaSchuster
closed
2 years ago
0
Add schematic representation of data model
#8
skrakau
closed
1 year ago
0
Update module prodigal
#7
AntoniaSchuster
closed
2 years ago
2
add publish_dir for multiqc to modules.config
#6
AntoniaSchuster
closed
2 years ago
2
Change pipeline version to 1.0dev
#5
AntoniaSchuster
closed
2 years ago
1
Merge dsl2 template
#4
AntoniaSchuster
closed
2 years ago
2
Fix generation of dict_proteinId_assemblyIds for Entrez download
#3
skrakau
closed
2 years ago
1
Avoid redundant processing of co-assemblies
#2
AntoniaSchuster
closed
2 years ago
4
Important! Template update for nf-core/tools v2.2
#1
nf-core-bot
closed
2 years ago
0
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