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nf-core
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test-datasets
Test data to be used for automated testing with the nf-core pipelines
https://nf-co.re
MIT License
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Is there a better way to provide test-data for modules than we currently have, with the two stage process.
#1251
SPPearce
opened
4 months ago
1
If we are not allowing links to external git files, then we need to deal with all those files
#1250
SPPearce
opened
4 months ago
1
Very carefully delete any branches that are unnecessary (especially ones that have already been merged)
#1249
SPPearce
opened
4 months ago
3
Generate a page on the website to be able to view the current test data
#1248
SPPearce
opened
4 months ago
0
Organise and document the files that we currently have better, rather than one massive README with single lines of text.
#1247
SPPearce
opened
4 months ago
0
Determine what we want to do with tools with very specific test data files
#1246
SPPearce
opened
4 months ago
0
Rearrange and rename the `delete_me` folder
#1245
SPPearce
opened
4 months ago
2
Set up a GitHub bot to automatically post links to new PRs into the #request-review or #test-datasets slack channels.
#1244
SPPearce
opened
4 months ago
0
Modules test-data task force master list
#1243
SPPearce
opened
4 months ago
0
Change chromosome notation to "chr"
#1242
LeonHafner
closed
5 months ago
0
feat: add indices to generate an empty FASTQ with bcl-convert
#1241
k1sauce
closed
5 months ago
0
Update test data for bcl_demultiplex subworkflow
#1240
k1sauce
closed
5 months ago
0
add ascat loci and allele files
#1239
famosab
opened
5 months ago
3
Update values of db_type in the test databases
#1238
LilyAnderssonLee
closed
5 months ago
2
Added AGAT config
#1237
GallVp
closed
4 months ago
1
Add metamaps
#1236
sofstam
closed
5 months ago
0
Create metamaps test dataset
#1235
sofstam
closed
5 months ago
0
added sage base parameters to proteomics/parameters test datasets
#1234
dgemperline-lilly
closed
5 months ago
0
Use smaller chunks
#1233
LouisLeNezet
closed
5 months ago
0
Add haplegend files for chr21
#1232
atrigila
closed
5 months ago
0
Add immunofluorescence tif test data for spot detection
#1231
migueLib
closed
5 months ago
0
Update TAXPROFILER database sheet to inclued KMCP mode for testing
#1230
jfy133
closed
5 months ago
0
Add new set of files for testing
#1229
atrigila
closed
5 months ago
0
adding hmm sars-cov-2
#1228
Joon-Klaps
closed
5 months ago
0
Multiplesequencealign
#1227
luisas
closed
5 months ago
0
Multiplesequencealign
#1226
luisas
closed
5 months ago
0
Update toolsheet full
#1225
luisas
closed
5 months ago
0
modkit pileup test data
#1224
fellen31
closed
5 months ago
2
Update - Hashing Demultiplexing data
#1223
mari-ga
closed
5 months ago
0
Created pipeline-specific README
#1222
itrujnara
closed
5 months ago
0
Add files via upload
#1221
atrigila
closed
5 months ago
0
Change count_table the right format
#1220
LaurenceKuhl
closed
6 months ago
0
Adding the test datasets for ViennaRNA/RNAcofold and ViennaRNA/RNAup
#1219
kokul-atx
closed
6 months ago
0
Adding spring-files
#1218
asp8200
closed
6 months ago
2
ID map update
#1217
itrujnara
closed
6 months ago
0
Added single-query samplesheet
#1216
itrujnara
closed
6 months ago
1
Added minified databases for offline testing
#1215
itrujnara
closed
6 months ago
0
PR: Restore before direct commit
#1214
sguizard
closed
6 months ago
0
Add paraphase test data
#1213
fellen31
closed
6 months ago
0
fix: split single FASTQ into it's own sample sheet
#1212
nh13
closed
6 months ago
0
Update samplesheet.multi_fastq.csv
#1211
nh13
closed
6 months ago
0
Fix FASTQ extension in samplesheet.multi_lanes.csv
#1210
nh13
closed
6 months ago
0
Multi sample and multi fastq tests
#1209
nh13
closed
6 months ago
0
Testdata for xeniumranger modules
#1208
khersameesh24
closed
1 month ago
0
Add test file for `MuSE sump`
#1207
famosab
closed
6 months ago
0
Updated reference data to current Version of FORCE
#1206
Felix-Kummer
closed
6 months ago
0
Third FASTQ containing UMI sequences
#1205
adamrtalbot
opened
6 months ago
0
Update chr22_chunks_glimpse1.txt
#1204
atrigila
closed
6 months ago
0
test-data for RNA-seq input
#1203
mapo9
closed
6 months ago
0
Added RNA-seq test datasets
#1202
avani-bhojwani
closed
6 months ago
0
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