ngless-toolkit / ngless-contrib

A collection of NGLess modules open to community contributions
http://ngless.embl.de
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bioinformatics metagenomics ngless pipeline

NGLess - External modules & community contributions

In this repository you can find external modules for NGLess.

External modules are thin wrappers around different tools, making them convenient to integrate into NGLess scripts.

Install

For a quick installation of all modules, clone this repository to some location on your computing servers and use the install.sh script provided. Symbolic links will be created in NGLess' user external module folder pointing to each module and version present in this repository.

Contributing

If you would like to have your favorite tool available in NGLess, let us know or open a pull request

Documentation

You can find a README.md file inside each external module containing an example script and a table with the arguments that can be passed to the provided NGLess functions.