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niemasd
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ViReflow
An elastically-scaling automated AWS pipeline for viral consensus sequence generation
GNU General Public License v3.0
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Add "None" as read trimmer option
#19
niemasd
closed
2 years ago
1
SARS-CoV-2 workflow comparison - kindly check if your work is represented correctly
#18
thomasbtf
closed
2 years ago
3
Add minia as optional step
#17
niemasd
closed
2 years ago
1
Add VirStrain as an optional step
#16
niemasd
closed
2 years ago
1
Add QualiMap as optional step
#15
niemasd
opened
3 years ago
1
Add MultiQC as optional step
#14
niemasd
opened
3 years ago
1
Add link to ViReflow-Paper repo
#13
niemasd
closed
2 years ago
0
Bug when there's ridiculously low coverage
#12
niemasd
opened
3 years ago
1
Add "stop mapping reads at X successfully-mapped reads" as optional feature
#11
niemasd
closed
3 years ago
2
Add pangolin lineage call as optional output
#10
niemasd
closed
3 years ago
1
Add GUI
#9
niemasd
closed
3 years ago
1
Add genome assembly as optional step
#8
niemasd
closed
3 years ago
1
Add Cutadapt
#7
niemasd
opened
3 years ago
0
Add Trimmomatic
#6
niemasd
closed
3 years ago
1
Add pTrimmer
#5
niemasd
closed
3 years ago
2
Add mutect2
#4
niemasd
closed
3 years ago
1
Possible bug when handling positions with multiple alternate alleles
#3
niemasd
closed
3 years ago
3
Add fastp and other trimmers
#2
niemasd
closed
3 years ago
2
Add user-selectable choices for multiple tools
#1
niemasd
closed
3 years ago
1