nmdp-bioinformatics gfe-db issues

nmdp-bioinformatics / gfe-db

Graph database representing IPD-IMGT/HLA sequence data as GFE

https://gfe-db.readthedocs.io

GNU General Public License v3.0

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issues

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Sphinx documentation for gfe-db

#64 chrisammon3000 closed 2 years ago
0
Server-side loading

#62 chrisammon3000 closed 2 years ago
0
Refactor for apoc.iterate()

#61 chrisammon3000 closed 2 years ago
0
Check dependencies before deployment

#60 chrisammon3000 closed 2 years ago
0
AWS Deploy: Check for Pre-reqs

#59 pbashyal-nmdp closed 2 years ago
1
Add the feature sequence as an attribute of Feature node

#58 pbashyal-nmdp opened 2 years ago
0
Retries for failed alleles

#57 chrisammon3000 opened 2 years ago
2
Add backup to S3; Configure Neo4j AMI for EC2; Configure database EBS volume; Update graph schema

#56 chrisammon3000 closed 2 years ago
2
Add Makefile

#55 chrisammon3000 closed 2 years ago
0
Add nested stacks and deploy script

#54 chrisammon3000 closed 3 years ago
0
gfe-db update service

#53 chrisammon3000 closed 3 years ago
0
Add IaC

#52 chrisammon3000 closed 3 years ago
0
remove alignments from GFE database

#51 mmaiers-nmdp closed 9 months ago
1
Add instructions for EC2 deployment

#50 chrisammon3000 closed 3 years ago
0
remove gfe_name from Feature node in new Neo4j model

#49 mmaiers-nmdp opened 3 years ago
1
Design a new "submitter" node and an relationship between submitter and GFE with attributes like "date/time" on the edge

#48 mmaiers-nmdp closed 9 months ago
1
Update load script with PERIODIC COMMIT, update schema

#47 chrisammon3000 closed 3 years ago
1
Update for Cypher LOAD CSV, Neo4j 4.2 Docker

#46 chrisammon3000 closed 3 years ago
0
remove 2nd field as a node/edge

#45 mmaiers-nmdp closed 3 years ago
1
Upgrade py-ard to 0.6.1

#44 pbashyal-nmdp closed 3 years ago
0
refeactor gfe db model

#43 mmaiers-nmdp closed 9 months ago
1
change address of neo4j server to gfedb.b12x.org

#42 mmaiers-nmdp opened 3 years ago
2
model violates conventions for nodes and edge labels starting with a number

#41 mmaiers-nmdp closed 9 months ago
1
add the feature number (as it appears in the GFE string) as an attribute of the FEATURE node

#40 mmaiers-nmdp closed 9 months ago
1
Minor versioning isn't reflected in the output

#39 mmaiers-nmdp opened 4 years ago
0
Update Neo4j to 4.0

#38 mmaiers-nmdp closed 9 months ago
3
devel build should reflect the prod build

#37 mmaiers-nmdp opened 4 years ago
0
Simplified GFE DB Build

#36 pbashyal-nmdp closed 4 years ago
0
Dockerfile for gfebase image

#35 pbashyal-nmdp closed 5 years ago
0
Fix Docker build

#34 pbashyal-nmdp closed 5 years ago
0
Turn off "Bolt" authentication method by default

#33 jbrelsf2-nmdp opened 5 years ago
0
Determine build details for mhalagan1nmdp/gfe-base image

#32 jbrelsf2-nmdp opened 5 years ago
1
Added readme for local development integration

#31 m-haziq closed 5 years ago
0
Updated IMGT version in docker commands

#30 m-haziq closed 5 years ago
0
Added RELEASES env variable guideline to "Building graph from source"

#29 m-haziq closed 5 years ago
2
Update running command for build.sh

#28 m-haziq closed 5 years ago
0
Fix build.sh path error

#27 m-haziq closed 5 years ago
2
Building Graph from source: RELEASES env variable is not set.

#26 m-haziq closed 5 years ago
0
bin/build.sh: 17: [: unexpected operator

#25 m-haziq closed 5 years ago
0
cp: cannot stat '/mod-imgt/C_gen.sth': No such file or directory

#24 m-haziq closed 5 years ago
0
Change the instructions in readme.txt to support the new 3360,3370

#23 jbrelsf2-nmdp closed 5 years ago
0
GFE db amino acid sequence at the feature level

#22 mmaiers-nmdp opened 5 years ago
3
Read from local KIR.dat file

#21 mmaiers-nmdp opened 5 years ago
4
debug mode for individual HLA/KIR

#20 pbashyal-nmdp closed 5 years ago
0
Urllib3upgrade

#19 jbrelsf2-nmdp closed 5 years ago
1
Fix for build and deploy of 3360

#18 jbrelsf2-nmdp closed 5 years ago
0
Ignoring 3360

#17 jbrelsf2-nmdp closed 5 years ago
0
Dockerfilechange

#16 jbrelsf2-nmdp closed 5 years ago
1
Imgturl

#15 mmaiers-nmdp closed 5 years ago
0
make base URL a parameter (not in the code)

#14 mmaiers-nmdp closed 5 years ago
1

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