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nmdp-bioinformatics
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pipeline
Consensus assembly and allele interpretation pipeline.
GNU Lesser General Public License v3.0
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Update process_fastq.bash
#31
warrenlr
closed
9 years ago
1
option to set toolpath directory
#30
ybolon-nmdp
closed
9 years ago
1
splitter gives non-intuitive message when handed only compressed fastq files
#29
janders3-nmdp
closed
9 years ago
2
do notuse system /tmp, user ~/tmp
#28
janders3-nmdp
closed
9 years ago
1
Localize tmp
#27
janders3-nmdp
closed
9 years ago
0
pipeline assumes that /tmp/boilerplate.bcl is writable!
#26
janders3-nmdp
closed
9 years ago
0
we should put something in the wiki
#25
janders3-nmdp
closed
9 years ago
2
change builder access methods to withStart() and withEnd()
#24
ckennedy-nmdp
closed
9 years ago
1
Add Travis CI configuration
#23
ghost
closed
9 years ago
0
Update picard dependency to htsjdk version 1.118
#22
ghost
closed
9 years ago
1
one less 'reference'
#21
janders3-nmdp
closed
9 years ago
0
Adding license header, style fixes
#20
ghost
closed
9 years ago
1
needs to reference installed nmdp-ngs tools
#19
janders3-nmdp
closed
9 years ago
0
necessary path fixes
#18
janders3-nmdp
closed
9 years ago
1
write wrapper script for groovy.
#17
janders3-nmdp
closed
9 years ago
4
creation of prep_data_dir, dependant on presence of /opt/data/tutorial/f...
#16
janders3-nmdp
closed
9 years ago
0
improving error message on TOOLDIR setting. Fixes issue #11
#15
janders3-nmdp
closed
9 years ago
0
Filter groovy script (Sorry Michael)
#14
ckennedy-nmdp
closed
9 years ago
3
Process unpaired (SRA) data
#13
ckennedy-nmdp
closed
9 years ago
1
Make a script to get sample data and build directory structure
#12
ckennedy-nmdp
closed
9 years ago
1
Can't run splitter
#11
ckennedy-nmdp
closed
9 years ago
1
Add proper license headers
#10
ghost
closed
9 years ago
0
Add proper license headers
#9
ghost
closed
9 years ago
1
Script improvements
#8
janders3-nmdp
closed
9 years ago
0
scripts should do more error checking
#7
janders3-nmdp
closed
9 years ago
2
Initial script checkin
#6
janders3-nmdp
closed
9 years ago
0
Initial script checkin
#5
janders3-nmdp
closed
9 years ago
1
Adding walkthrough to contrib docs
#4
ghost
closed
9 years ago
0
Import initial codebase
#3
ghost
closed
9 years ago
5
DRR003809 (DKB) HLA-A*24:02:01:01 exons 2 and 3 UCSC screenshot
#2
ckennedy-nmdp
closed
9 years ago
1
Adding empty contributing doc
#1
ghost
closed
9 years ago
0
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