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update http://savannah.nongnu.org/projects/bammds/
#100
sapfo
opened
10 years ago
0
update the article citation in the verbose
#99
sapfo
opened
10 years ago
0
bammds_parallel
#98
sapfo
opened
10 years ago
6
Legend file: duplicate name NGS and reference panel...
#97
sapfo
opened
10 years ago
0
Runtimes and memory use for different runs
#96
ole-tange
closed
10 years ago
7
paper submission: what is needed
#95
sapfo
opened
10 years ago
4
Test parallel --round-robin
#94
ole-tange
closed
10 years ago
1
bammds: Warning: Not overwriting legend.csv duplicated
#93
sapfo
closed
10 years ago
7
R is a memory pig, so the bammds_plot.r cannot run on small machines
#92
ole-tange
closed
10 years ago
14
Ordering, duplicated names in the legend file
#91
sapfo
opened
10 years ago
9
pdf output file for publication
#90
sapfo
closed
10 years ago
12
summary of number of snps: slow when rerunning
#89
sapfo
closed
10 years ago
11
bug: when the snps are not ordered, the samtools pileup crashes
#88
sapfo
opened
10 years ago
9
bamdamage man page
#87
ole-tange
closed
10 years ago
2
doc directory and *4mac files not packed
#86
morenomayar
closed
10 years ago
7
Create webpage under newton: dna.ku.dk/~sapfo/bammds
#85
ole-tange
closed
10 years ago
5
Test bammds on watt
#84
ole-tange
closed
10 years ago
5
simulations: new ancient genome
#83
ole-tange
closed
10 years ago
1
simulations: describe centroid etc in the ms
#82
ole-tange
closed
10 years ago
1
simulations: correct region assignment
#81
ole-tange
closed
10 years ago
1
Update man page with correct input file order
#80
mortenr
closed
10 years ago
4
configure & make dist-gz: help installing fatpack
#79
sapfo
closed
10 years ago
2
parent.pm library
#78
morenomayar
closed
10 years ago
4
pca, mds: are we still outputing both by default?
#77
sapfo
closed
10 years ago
7
output on the screen: by default too much info?
#76
sapfo
closed
10 years ago
7
on eos, lemaitre: no manual page
#75
sapfo
closed
10 years ago
3
on eos, lemaitre: problem with R: no output is being generated
#74
sapfo
closed
10 years ago
5
add mike to ped format converter etc
#73
morenomayar
closed
10 years ago
2
Filling up /tmp
#72
morenomayar
closed
10 years ago
5
csv output not working
#71
morenomayar
closed
10 years ago
1
Long names not working
#70
morenomayar
closed
10 years ago
7
configure & make install: for macs
#69
sapfo
closed
10 years ago
2
small bugs
#68
sapfo
closed
10 years ago
6
dim1 and dim2 as alias for xvector/yvector
#67
ole-tange
closed
10 years ago
1
rmpop/rmind: do we still have that in?
#66
sapfo
closed
10 years ago
7
bamdamage: need to rewrite this script. it contains notably a bug with regard to Ns.
#65
sapfo
opened
10 years ago
16
Some file formats give more markers than expected
#64
ole-tange
closed
10 years ago
8
Installation guide
#63
ole-tange
closed
10 years ago
1
Report which kind of sites are triallelic
#62
ole-tange
closed
10 years ago
1
Very high proportion of triallelic sites with different ref datasets !!!!!!!
#61
morenomayar
closed
10 years ago
11
bam against bam does not work
#60
morenomayar
closed
10 years ago
3
Speed up summing by using --round-robin
#59
ole-tange
closed
10 years ago
2
Does the order of markers in the ASD-file matter?
#58
ole-tange
closed
10 years ago
1
bammds crashes when running on a different bam file
#57
sapfo
closed
10 years ago
5
Read file in R is slow
#56
ole-tange
closed
10 years ago
2
bammds testinputfiles/batch_31.vcf -m 30 -n 20
#55
sapfo
closed
10 years ago
2
empty asdfile: crash, dont run the plotting part and output an error message?
#54
sapfo
closed
10 years ago
1
simulations: timing
#53
sapfo
closed
10 years ago
2
chromosome: could be any word..check for that?
#52
sapfo
closed
10 years ago
1
clean the directory for old files etc
#51
sapfo
closed
10 years ago
1
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