olgabot nf-kmer-similarity issues

olgabot / nf-kmer-similarity

MIT License

1 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Add fastqc, khtools, multiqc to dependencies

#35 olgabot opened 4 years ago
0
Add fastp to container

#34 olgabot opened 4 years ago
0
Add option to filter reads based on matches to known database you don't want

#33 olgabot opened 4 years ago
1
Olgabot/add ska to container

#32 olgabot closed 4 years ago
0
bam file compatibilty

#31 pranathivemuri closed 5 years ago
3
make pysam work by adding dependencies and add conda path

#30 pranathivemuri closed 5 years ago
6
Olgabot/split kmer

#29 phoenixAja opened 5 years ago
0
Olgabot/increase max time

#28 olgabot closed 4 years ago
0
Add split k-mer analysis

#27 olgabot opened 5 years ago
0
Use olgabot/dayhoff branch to build sourmash

#26 olgabot closed 5 years ago
0
Add option to extract raw k-mers

#25 olgabot opened 5 years ago
0
Add option to create MinHash LSH

#24 olgabot opened 5 years ago
0
Add FASTQC with option of skipping

#23 olgabot opened 5 years ago
0
Add trimming of adapter sequences with option of skipping

#22 olgabot opened 5 years ago
0
Add multiqc on `sourmash sig describe`

#21 olgabot opened 5 years ago
0
Add nf-core template stuff

#20 olgabot closed 5 years ago
0
Add dayhoff encoding

#19 olgabot closed 5 years ago
1
Fix inputting with fasta and generating one signature per record

#18 olgabot opened 5 years ago
0
Add option to rename inputs based on a label file

#17 olgabot opened 5 years ago
0
Support single-end reads

#16 olgabot opened 5 years ago
0
Don't calculate dna signature if protein signature is calculated

#15 olgabot opened 5 years ago
0
Add trimming, fastqc, software versions, email notifications from nf-core

#14 olgabot opened 5 years ago
1
Add option for sourmash index

#13 olgabot opened 5 years ago
0
Add option to index the sketches after they've been computed

#12 olgabot opened 5 years ago
0
aws batch executor jobs showing up as failing

#11 phoenixAja opened 5 years ago
1
Add documentation

#10 olgabot closed 5 years ago
1
Add ncbi authentication

#9 olgabot closed 5 years ago
0
Add option to trim low abundance reads

#8 olgabot opened 5 years ago
2
Add input is protein option

#7 olgabot opened 5 years ago
1
Add --input-is-protein option

#6 olgabot opened 5 years ago
0
Add travis CI for testing small datasets

#5 olgabot opened 5 years ago
0
Fix url for docker tag

#4 olgabot closed 5 years ago
0
Add docker badge and fix docker build

#3 olgabot closed 5 years ago
0
Support multiple sample inputs: SRA ids, s3/local directories of fastq files, or samples.csv

#2 olgabot closed 5 years ago
2
Use multiple of total file size for memory for sourmash_compare_sketches

#1 olgabot opened 5 years ago
0