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ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
https://ngff.openmicroscopy.org
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"standalone" label images
#179
bogovicj
opened
1 year ago
4
Efficiently storing millions of spots
#178
tischi
opened
1 year ago
17
Proposal: move to RTD
#177
joshmoore
closed
1 year ago
7
Fix `<img/>` element for newer bikeshed versions
#176
joshmoore
closed
1 year ago
2
Add CITATION.cff
#175
joshmoore
opened
1 year ago
3
Adapt the CF conventions data model
#174
d-v-b
opened
1 year ago
30
Metadata: User stories for named channels
#173
tischi
opened
1 year ago
1
simplify multiscale and examples
#172
d-v-b
opened
1 year ago
4
Add ITKIOOMEZarrNGFF to implementations
#171
dzenanz
closed
1 year ago
4
Resolving misc issues and ambiguities in labels section
#170
virginiascarlett
opened
1 year ago
3
Backporting test suites
#169
manzt
opened
1 year ago
0
unit -> units
#168
d-v-b
closed
1 year ago
22
FAQ: what are ways to transition to NGFFs?
#166
joshmoore
opened
1 year ago
3
Labels section rewrite
#165
virginiascarlett
closed
1 year ago
6
Find out what labeled object represents if names to labels have not been given
#164
aliaksei-chareshneu
closed
1 year ago
1
Interpreting OME Zarr data
#163
aliaksei-chareshneu
opened
2 years ago
11
Sample NGFF (OME Zarr) 3D volumetric data
#162
aliaksei-chareshneu
opened
2 years ago
1
Allow '.' dimension separator
#161
normanrz
closed
9 months ago
16
Replace link to OME logo with an https link
#160
JulianHn
closed
2 years ago
2
ngff.o.org as a sign post
#159
joshmoore
opened
2 years ago
0
Mixed content warning on https://ngff.openmicroscopy.org/latest/
#158
JulianHn
closed
2 years ago
0
units unit fix
#157
will-moore
closed
1 year ago
14
units instead of unit
#156
will-moore
closed
1 year ago
1
specs for axes coordinates information
#155
giovp
closed
1 year ago
9
Require same datatype for all arrays in multiscales:datasets
#154
constantinpape
opened
2 years ago
2
Scale array MUST have the same dtype
#153
constantinpape
closed
2 years ago
2
Add identity to image coordinateTransformations schema
#152
thewtex
opened
2 years ago
21
Multiscales order matters and indicates array size / resolution (?)
#151
bogovicj
opened
2 years ago
4
Fix review github action, use correct variable to format comment
#150
ivirshup
closed
2 years ago
5
Coordinate transforms json-schema (request for feedback)
#149
ivirshup
opened
2 years ago
2
[troubleshooting: ignore for now] Get CI rendering working
#148
ivirshup
closed
2 years ago
3
PR rendering CI
#147
ivirshup
closed
6 months ago
7
Affine transformations specification are not decoupled from their input and output spaces
#146
LucaMarconato
opened
2 years ago
2
Rename to OME-Zarr?
#145
normanrz
opened
2 years ago
2
Referencing zarr stores, groups, arrays, and attributes
#144
bogovicj
opened
2 years ago
18
Coordinate Transformation to map yx labels to cyx image
#143
LucaMarconato
closed
2 years ago
1
Add optional "long_name" to "axes"
#142
thewtex
opened
2 years ago
4
consolidate Plate to preview image
#141
will-moore
opened
2 years ago
2
List sources of sample data
#140
joshmoore
opened
2 years ago
8
Ngff tools table
#139
will-moore
closed
2 years ago
28
Coordinate systems and new coordinate transformations proposal
#138
bogovicj
opened
2 years ago
49
Generalize well organization in high-content screening: field of view => image
#137
jluethi
opened
2 years ago
10
Add section about JSON schemas
#136
sbesson
closed
2 years ago
2
Allow `.` as the dimension separator
#135
jstriebel
opened
2 years ago
4
Fix formatting of link to WebGateway documentation
#134
melissalinkert
closed
10 months ago
1
How do we represent regions of interest in OME-NGFF?
#133
jluethi
opened
2 years ago
9
Process definition
#132
joshmoore
closed
9 months ago
2
Add missing ids to strict_image.schemas
#131
will-moore
closed
2 years ago
1
image-label: JSON schemas and clarifications
#130
sbesson
closed
2 years ago
8
Review workflow: fix generated URL.
#129
sbesson
closed
2 years ago
6
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