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onecodex
/
finch-rs
A genomic minhashing implementation in Rust
https://www.onecodex.com
MIT License
92
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8
forks
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Fix newlines in sketch kmers
#70
audy
closed
9 months ago
0
Increase capnproto size
#69
audy
opened
10 months ago
0
bottom-k implementation
#68
jianshu93
closed
8 months ago
2
Fix for Dockerfile smell DL3025
#67
grosa1
closed
1 year ago
1
Next version
#66
Keats
closed
1 year ago
0
Fix bug with reverse complement not being normalized.
#65
donovan-h-parks
opened
1 year ago
0
Avoid creating an array for histogram
#64
Keats
closed
1 year ago
0
u64 integer with u16 length limit results in large files having vector overflow error
#63
NateBaileyTempus
closed
1 year ago
4
Make numpy an optional dependency
#62
jairideout
closed
1 year ago
0
Borrow sequence records
#61
Keats
closed
1 year ago
0
Bump lib version to 0.4.3
#60
jairideout
closed
2 years ago
0
Add no_strict parameter to Python bindings
#59
jairideout
closed
2 years ago
0
Bump finch_cli to 0.4.1
#58
jairideout
closed
2 years ago
0
Bump library to 0.4.2
#57
jairideout
closed
2 years ago
0
Bump dependencies
#56
jairideout
closed
2 years ago
0
Bump crossbeam-utils from 0.8.1 to 0.8.8
#55
dependabot[bot]
closed
2 years ago
1
Bump crossbeam-deque from 0.8.0 to 0.8.1
#54
dependabot[bot]
closed
2 years ago
0
support for aminio acid proteome
#53
jianshu93
opened
2 years ago
0
Separate CLI and lib
#52
Keats
closed
3 years ago
4
Cleanup + update
#51
Keats
closed
3 years ago
0
Add license scan report and status
#50
fossabot
closed
3 years ago
1
Build binary wheels for Python 3.8 and 3.9 on release
#49
boydgreenfield
opened
4 years ago
0
split finch-rs into library and binary
#48
maxbla
closed
3 years ago
0
Make raw_distance function commutative
#47
maxbla
closed
4 years ago
7
Remove rust-toolchain and mess with CI
#46
maxbla
closed
4 years ago
1
Transitive dependency memoffset won't build on old nightly
#45
maxbla
closed
4 years ago
1
circleci -> gh actions
#44
Keats
closed
4 years ago
0
Tree command
#43
bovee
opened
4 years ago
1
Add Dockerfile to build Finch binary
#42
polyatail
closed
4 years ago
0
Better distances using counts
#41
bovee
opened
4 years ago
1
Generate python documentation
#40
bovee
opened
4 years ago
0
Build python library/wheels
#39
bovee
closed
4 years ago
1
Enable code coverage tracking
#38
bovee
opened
5 years ago
0
multi-threaded mash_files
#37
wwood
closed
4 years ago
7
[WIP] Expose scaled minhash in the CLI
#36
luizirber
closed
4 years ago
1
[WIP] Hash schemes
#35
bovee
closed
4 years ago
0
Update circle CI to 2.0 config
#34
luizirber
closed
5 years ago
0
Add Finch to AFproject.org
#33
boasvdp
opened
5 years ago
1
Optimize loading sketch file
#32
dtolnay
closed
5 years ago
2
Attempting Excessive Memory Allocation
#31
dcdanko
closed
5 years ago
9
Version 0.2.0
#30
bovee
closed
5 years ago
0
Improve filtering API
#29
bovee
opened
5 years ago
0
dist takes parameters that are silently ignored when passed sketch files
#28
hgbrian
closed
4 years ago
2
Allow different sketches in the same multisketch to have different kmer sizes
#27
bovee
opened
5 years ago
0
Other Hash Functions
#26
bovee
opened
6 years ago
9
Error when kmer count >65535 (per kmer)
#25
bovee
closed
4 years ago
2
`finch` query/reference selection is confusing
#24
bovee
closed
4 years ago
1
Internal refactoring and support for binary Mash format
#23
bovee
closed
6 years ago
0
Now in brew
#22
tseemann
closed
6 years ago
1
Compatibility with Mash `msh` format
#21
bovee
closed
6 years ago
0
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