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opencobra
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cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
http://opencobra.github.io/cobrapy/
GNU General Public License v2.0
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Cannot import cobra: import error involving numpy
#1339
CNelias
closed
1 year ago
4
How to perform relaxedFBA with cobrapy?
#1338
helehera
closed
1 year ago
1
SBML file not getting uploaded
#1337
ksingh371
closed
1 year ago
2
createMultipleSpeciesModel function can not find in cobrapy
#1336
wupeng1998
closed
1 year ago
4
ContainerAlreadyContains error with the fastcc()
#1334
Alvis-Jiang
closed
1 year ago
3
How to set the model solver
#1333
brunorbqi
closed
1 year ago
1
Improve backwards compatibility for pickled models
#1332
cdiener
closed
1 year ago
1
gapfilling.ipynb bug fix
#1331
pablodig
closed
1 year ago
3
Remove pin for numpy
#1330
cdiener
closed
1 year ago
1
Give parameters to model.optimize()
#1328
KurtzMarina
closed
1 year ago
0
Can Not Open the SBML File
#1327
xuejun1214
closed
1 year ago
4
problems reading certain AGORA2 models
#1326
eugenibc
opened
1 year ago
3
model.reactions.get_by_id error
#1325
dtusso2020
closed
1 year ago
1
fix broken IO with httpx>=0.24
#1324
cdiener
closed
1 year ago
1
installation issue on v0.26.2
#1323
hariszaf
closed
1 year ago
9
remove obsolete numpy aliases `np.bool` and `np.float`
#1322
exaexa
closed
1 year ago
6
FVA gives back odd results
#1321
Patrickens
closed
1 year ago
2
from cobra.io import load_model model = load_model("textbook") model.medium
#1320
ChenCongZ
closed
1 year ago
4
Gapfilling constantly fails for model
#1319
kristycyw
closed
1 year ago
2
Link to docs fix
#1318
mdziurzynski
closed
1 year ago
2
Gapfilling keyerror during solution validation
#1315
jmol0917
closed
1 year ago
6
Problem saving model in SBML format
#1314
SergioBordel
closed
1 year ago
1
minimal media question
#1313
amarsh26
closed
1 year ago
1
Fix issue #1300
#1312
ym2877
closed
1 year ago
9
Delete duplicate reactions
#1311
helehera
closed
1 year ago
1
DeprecationWarnings
#1310
freiburgermsu
closed
1 year ago
9
reading sbml models based on MetaCyc/KEGG data bases
#1309
Rotembartuv
closed
1 year ago
2
Presence of objective influences FVA result even if fraction_of_optimum=0.0
#1308
axelvonkamp
closed
1 year ago
5
minimal media growth rate
#1307
amarsh26
closed
1 year ago
2
fix: set temporary upper bound for numpy version
#1306
marvinvanaalst
closed
1 year ago
1
Numpy 1.24 breaks builtin type aliases
#1305
marvinvanaalst
closed
1 year ago
7
trouble referencing the name variable
#1302
tillea
closed
7 months ago
6
Fix type for SBML history dates
#1301
cdiener
closed
2 years ago
1
Lower and upper bounds overwriting on save
#1300
ym2877
closed
1 year ago
2
Update tested python version
#1299
matthiaskoenig
closed
2 years ago
2
Repair the documentation
#1298
cdiener
closed
2 years ago
2
Update supported Python versions
#1293
cdiener
closed
2 years ago
2
Fix recursion error in Formula.__init__
#1292
cdiener
closed
2 years ago
2
cobra.core.formula.Formula gives maximum recursion depth exceeded error
#1291
axelvonkamp
closed
2 years ago
1
Implemented a faster algorithm of flux variability analysis
#1290
earmingol
closed
7 months ago
7
Documentation on https://cobrapy.readthedocs.io/en/latest/ not up to date
#1289
stellaprins
closed
2 years ago
3
Add/modify annotation
#1288
helehera
closed
2 years ago
0
cobra.exceptions.OptimizationError: Solver status is 'undefined'. TypeError: cannot pickle 'SwigPyObject' object
#1287
helehera
closed
2 years ago
1
FBA of Harvey and Harvetta
#1285
Wieri9
closed
2 years ago
0
Fetch available models from Web IO repositories.
#1284
achillesrasquinha
opened
2 years ago
1
feat: add progress to fva
#1283
achillesrasquinha
opened
2 years ago
4
feat: add embl gems repository
#1282
achillesrasquinha
opened
2 years ago
1
Add EMBL GEMs to Web IO Repository.
#1281
achillesrasquinha
opened
2 years ago
0
feat: add to_dataframe to dictlist
#1280
achillesrasquinha
closed
2 years ago
0
Showing progress during flux variability analysis.
#1279
achillesrasquinha
opened
2 years ago
3
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