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openpipelines-bio
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openpipeline
https://openpipelines.bio
MIT License
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add no-lane-splitting param
#799
dorien-er
opened
2 hours ago
0
772 scgpt zero shot cell type annotation
#798
jakubmajercik
opened
2 hours ago
0
784 integration test scgpt integration workflow
#797
dorien-er
opened
5 hours ago
0
776 refactor config new viash
#796
jakubmajercik
opened
3 days ago
0
Integration qc
#795
dorien-er
opened
3 days ago
0
Scgpt integration workflow
#794
dorien-er
opened
4 days ago
0
Pin scanpy for scvelo
#793
DriesSchaumont
closed
6 days ago
0
Pin scipy for popV
#792
DriesSchaumont
closed
6 days ago
0
Remove unsupported dtype from grep_annotation_column test.
#791
DriesSchaumont
closed
6 days ago
0
scGPT: use sparse matrix calculations
#790
dorien-er
opened
1 week ago
0
add neighbors and umap to scgpt workflow
#789
dorien-er
closed
1 week ago
0
Do not allow manually triggering builds from the main branch.
#788
DriesSchaumont
closed
1 week ago
0
784 integration test scgpt integration workflow
#787
jakubmajercik
closed
5 hours ago
0
777 implement scgpt cell type annotation workflow
#786
jakubmajercik
opened
2 weeks ago
0
777 scgpt cell type annotation workflow
#785
jakubmajercik
opened
2 weeks ago
0
Adding an integration test for scGPT integration workflow
#784
dorien-er
opened
2 weeks ago
0
Extend Integration tests
#783
KaiWaldrant
opened
3 weeks ago
0
Generate scGPT preproc subworkflow
#782
dorien-er
opened
3 weeks ago
0
Generate scGPT utils
#781
dorien-er
opened
3 weeks ago
0
Implement scGPT test resources script
#780
dorien-er
opened
3 weeks ago
0
Fix argument passing to qc wf in rna_singlesample
#779
rcannood
closed
1 week ago
0
cellranger multi: make the lane optional
#778
rcannood
closed
3 weeks ago
0
implement scGPT cell type annotation workflow
#777
jakubmajercik
opened
3 weeks ago
0
Refactor components to use new Viash version >= 0.9.0
#776
jakubmajercik
opened
3 weeks ago
0
Develop
#775
DriesSchaumont
closed
1 month ago
0
Update 10x and Illumina related components.
#774
DriesSchaumont
opened
1 month ago
0
Remove muon as test dependency for concatenate_h5mu
#773
DriesSchaumont
closed
1 month ago
0
Generate scGPT zero-shot cell type annotation module
#772
dorien-er
opened
1 month ago
1
Implement cellranger mkgtf
#771
jakubmajercik
closed
4 days ago
0
Create `mudata` namespace an move components that perform basic operation on the mudata objec to it (`delete_layer`, `remove_modality`). Most of these currently are put in the `metadata` or `filter` namespace.
#770
DriesSchaumont
opened
1 month ago
0
Update script to work with sparse data
#769
DriesSchaumont
closed
1 month ago
0
763 scgpt split data
#768
jakubmajercik
opened
1 month ago
0
Add option to set axis for clr normalization.
#767
jakubmajercik
opened
1 month ago
0
stdout/err stored on fail
#766
jakubmajercik
closed
1 month ago
0
scGPT binning component
#765
dorien-er
closed
1 month ago
1
Subset scGPT resources
#764
dorien-er
closed
1 month ago
0
Generate an scGPT module to split data
#763
jakubmajercik
opened
1 month ago
0
Feature/atac count
#762
VladimirShitov
opened
1 month ago
0
scGPT embedding component
#761
dorien-er
closed
4 days ago
2
Release 1.0.0-rc3
#760
DriesSchaumont
closed
1 month ago
0
Fix publishing in process_samples and process_batches
#759
DriesSchaumont
closed
1 month ago
0
Generate scgpt cross check genes module
#758
jakubmajercik
closed
4 days ago
2
Implement cellranger mkgtf
#757
DriesSchaumont
opened
1 month ago
0
Fix missing 'ps' in container images
#756
DriesSchaumont
closed
1 month ago
0
Scgpt dev
#755
dorien-er
closed
1 month ago
0
scGPT padding and tokenization component
#754
dorien-er
closed
1 week ago
0
Tokenize pad
#753
dorien-er
closed
1 month ago
0
Add ability to override axis for clr normalization
#752
ddemaeyer
opened
1 month ago
0
scGPT integration preproc module
#751
dorien-er
closed
1 month ago
0
add script to download scgpt test resources
#750
dorien-er
closed
1 month ago
3
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