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openproblems-bio
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openproblems
Formalizing and benchmarking open problems in single-cell genomics
MIT License
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Bugfix/lowercase GitHub repo owner
#794
scottgigante-immunai
closed
1 year ago
0
updated scib version
#793
danielStrobl
closed
1 year ago
11
add new dataloaders
#792
danielStrobl
closed
1 year ago
11
Update IRkernel to 1.3.2
#791
github-actions[bot]
opened
1 year ago
0
add metrics from graph subtask to embedding task
#790
danielStrobl
closed
1 year ago
3
Update sagemaker requirement from ==2.116.* to ==2.130.* in /docker/openproblems
#789
dependabot[bot]
closed
1 year ago
1
Add scipy to requirements.txt for r-extras docker
#788
wes-lewis
closed
1 year ago
1
Update styler to 1.9.0
#787
github-actions[bot]
closed
1 year ago
1
Update sagemaker requirement from ==2.116.* to ==2.129.* in /docker/openproblems
#786
dependabot[bot]
closed
1 year ago
1
Daniel strobl hvg conservation fix
#785
danielStrobl
closed
1 year ago
11
save initial layer in X for adata_pre
#784
danielStrobl
closed
1 year ago
4
Fix flaky R installations in docker build
#783
scottgigante-immunai
closed
1 year ago
0
Add missing DR references
#782
rcannood
closed
1 year ago
1
Why is qnn_auc clipped between 0.5 and 1.0?
#781
rcannood
closed
1 year ago
5
Mean score should be computed & displayed separately for raw or scaled
#780
mxposed
closed
1 year ago
6
Pass raw counts to neuralee
#779
scottgigante-immunai
closed
1 year ago
1
change multimodal data integration task name to matching modalities
#778
LuckyMD
closed
1 year ago
9
Update sagemaker requirement from ==2.116.* to ==2.128.* in /docker/openproblems
#777
dependabot[bot]
closed
1 year ago
1
Label projection describe datasets
#776
mxposed
closed
1 year ago
2
More bibliography typos
#775
scottgigante
closed
1 year ago
0
fix typo in bibliography path
#774
scottgigante-immunai
closed
1 year ago
0
Why is CPM the default normalization?
#773
adamgayoso
closed
1 year ago
4
[Label projection] Dataset zebrafish_labs does not have equal distribution of cell types per lab
#772
mxposed
opened
1 year ago
11
[Label projection] scANVI task sees test cells during training
#771
mxposed
closed
1 year ago
6
Filter datasets by celltype
#770
scottgigante-immunai
closed
1 year ago
2
Fix output headers order
#769
scottgigante-immunai
closed
1 year ago
0
Pre-normalize dimensionality reduction datasets
#768
scottgigante-immunai
closed
1 year ago
2
Add pymde to dimensionality reduction
#767
scottgigante-immunai
closed
1 year ago
9
downgrade gtfparse and polars
#766
scottgigante-immunai
closed
1 year ago
0
Update sagemaker requirement from ==2.116.* to ==2.127.* in /docker/openproblems
#765
dependabot[bot]
closed
1 year ago
1
Adding all metrics to all subtasks (batch integration and other tasks with subtask structure)
#764
LuckyMD
closed
1 year ago
1
Add ALRA preprocessing identical to literature
#763
wes-lewis
closed
1 year ago
9
Update sagemaker requirement from ==2.116.* to ==2.126.* in /docker/openproblems
#762
dependabot[bot]
closed
1 year ago
1
Update sagemaker requirement from ==2.116.* to ==2.125.* in /docker/openproblems
#761
dependabot[bot]
closed
1 year ago
1
[Dimensionality reduction] Fix normalization in baselines
#760
scottgigante-immunai
closed
1 year ago
4
Update bslib to 0.4.2
#759
github-actions[bot]
closed
1 year ago
2
Fix docker image builds
#758
scottgigante-immunai
closed
1 year ago
0
[Batch integration] Isolated labels broken for pancreas data
#757
scottgigante-immunai
closed
1 year ago
0
[Dimensionality reduction] Metrics implicitly prefer specific normalizations
#756
scottgigante-immunai
closed
1 year ago
10
Update sagemaker requirement from ==2.116.* to ==2.124.* in /docker/openproblems
#755
dependabot[bot]
closed
1 year ago
1
Update sagemaker requirement from ==2.116.* to ==2.122.* in /docker/openproblems
#754
dependabot[bot]
closed
1 year ago
1
Update xgboost requirement from ==1.6.* to ==1.7.* in /docker/openproblems-python-extras
#753
dependabot[bot]
opened
1 year ago
2
Ccc aggregate + ligand-target subtask fix
#752
dbdimitrov
closed
1 year ago
1
Update torch requirement from ==1.12.* to ==1.13.* in /docker/openproblems-python-pytorch
#751
dependabot[bot]
closed
1 year ago
3
Bump cmake from 3.24.1.1 to 3.25.0 in /docker/openproblems-python-extras
#750
dependabot[bot]
closed
1 year ago
1
Update sagemaker requirement from ==2.116.* to ==2.121.* in /docker/openproblems
#749
dependabot[bot]
closed
1 year ago
1
Fix PID checking
#748
scottgigante-immunai
closed
1 year ago
0
Update sagemaker requirement from ==2.116.* to ==2.120.* in /docker/openproblems
#747
dependabot[bot]
closed
1 year ago
1
[Dimension Reduction Metric] Correlation for spectral distances
#746
mvinyard
closed
1 year ago
1
Prevent pip install conflicts
#745
scottgigante-immunai
closed
1 year ago
0
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