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openproblems-bio
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openproblems
Formalizing and benchmarking open problems in single-cell genomics
MIT License
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Update sagemaker requirement from ==2.116.* to ==2.136.* in /docker/openproblems
#844
dependabot[bot]
closed
1 year ago
2
Bump jax from 0.3.25 to 0.4.5 in /docker/openproblems-python-pytorch
#843
dependabot[bot]
closed
1 year ago
2
Shorten method descriptions
#842
scottgigante-immunai
closed
1 year ago
1
Precompute nn ranking for DR datasets
#841
scottgigante-immunai
closed
1 year ago
7
Update sagemaker requirement from ==2.116.* to ==2.135.* in /docker/openproblems
#840
dependabot[bot]
closed
1 year ago
3
Update sagemaker requirement from ==2.116.* to ==2.134.* in /docker/openproblems
#839
dependabot[bot]
closed
1 year ago
3
jitter baseline patch
#838
danielStrobl
closed
1 year ago
2
Test website pr
#837
rcannood
closed
1 year ago
3
Update sagemaker requirement from ==2.116.* to ==2.133.* in /docker/openproblems
#836
dependabot[bot]
closed
1 year ago
2
Add reversed norm order for ALRA in Denoising Task
#835
wes-lewis
closed
1 year ago
4
Harmonize batch integration dataset APIs
#834
scottgigante-immunai
closed
1 year ago
3
Update protobuf requirement from ==3.20.* to ==4.22.* in /docker/openproblems-python-tensorflow
#833
dependabot[bot]
closed
1 year ago
4
Bump jax from 0.3.25 to 0.4.4 in /docker/openproblems-python-pytorch
#832
dependabot[bot]
closed
1 year ago
2
Warnings fix
#831
scottgigante-immunai
closed
1 year ago
2
CI fails for all tasks
#830
danielStrobl
closed
1 year ago
0
HiVAE CCC method - potentially without code
#829
LuckyMD
closed
1 year ago
1
Set explicit token permissions
#828
scottgigante-immunai
closed
1 year ago
2
Changes in destVI code (#826)
#827
scottgigante-immunai
closed
1 year ago
2
Destvi updated train
#826
canergen
closed
1 year ago
8
new common baselines and cross import
#825
danielStrobl
closed
1 year ago
1
Changes in destVI code
#824
canergen
closed
1 year ago
4
Don't recompute X_emb and neighborhood graph for baseline datasets
#823
danielStrobl
closed
1 year ago
1
Bump jax from 0.3.25 to 0.4.3 in /docker/openproblems-python-pytorch
#822
dependabot[bot]
closed
1 year ago
2
[spatial_deconvolution] destVI stops extremely early
#821
canergen
closed
1 year ago
12
set adata.uns['is_baseline']
#820
scottgigante-immunai
closed
1 year ago
2
Copy anndata in metric decorator
#819
scottgigante-immunai
closed
1 year ago
4
Update sagemaker requirement from ==2.116.* to ==2.132.* in /docker/openproblems
#818
dependabot[bot]
closed
1 year ago
2
[batch integration] silhouette_batch not maximised by baselines
#817
scottgigante-immunai
closed
1 year ago
25
Fix DR baselines
#816
scottgigante-immunai
closed
1 year ago
4
Update nf-openproblems to v1.10
#815
scottgigante-immunai
closed
1 year ago
1
Update scvi-tools requirement from ~=0.19 to ~=0.20 in /docker/openproblems-r-pytorch
#814
dependabot[bot]
closed
1 year ago
6
Test all metadata
#813
scottgigante-immunai
closed
1 year ago
2
CPM -> CP10k
#812
scottgigante-immunai
closed
1 year ago
1
rmse -> distance correlation
#811
scottgigante-immunai
closed
1 year ago
5
Add method and metric descriptions
#810
scottgigante-immunai
closed
1 year ago
6
Bump jax from 0.3.25 to 0.4.2 in /docker/openproblems-python-pytorch
#809
dependabot[bot]
closed
1 year ago
2
Specify PR number
#808
scottgigante-immunai
closed
1 year ago
2
Use graph and embedding metrics for feature and embedding subtask
#807
danielStrobl
closed
1 year ago
8
Update bioc/scuttle to 1.8.4
#806
github-actions[bot]
opened
1 year ago
0
add new workflow to add status
#805
scottgigante-immunai
closed
1 year ago
0
run CI on PRs only with approving review
#804
scottgigante-immunai
closed
1 year ago
0
[DimRed] True features baseline evaluated twice
#803
lazappi
closed
1 year ago
2
Fix typo in dimensionality reduction dataset names
#802
lazappi
closed
1 year ago
7
Bump pymde from 0.1.15 to 0.1.18 in /docker/openproblems-python-pytorch
#801
dependabot[bot]
closed
1 year ago
2
Update sagemaker requirement from ==2.116.* to ==2.131.* in /docker/openproblems
#800
dependabot[bot]
closed
1 year ago
1
Update bioc/scran to 1.26.2
#799
github-actions[bot]
closed
1 year ago
1
[auto] Update docker version
#798
github-actions[bot]
closed
1 year ago
0
add magic with reverse norm order
#797
scottgigante-immunai
closed
1 year ago
4
add missing logfc decorator
#796
dbdimitrov
closed
1 year ago
0
Upgrade isort
#795
scottgigante-immunai
closed
1 year ago
0
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